Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MFSD8-233ENST00000641482 4860 ntBASIC3.24□□□□□ -1.89
RNF4P78317 MAPK10-322ENST00000641485 4530 ntBASIC3.24□□□□□ -1.89
RNF4P78317 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.24□□□□□ -1.89
RNF4P78317 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.24□□□□□ -1.89
RNF4P78317 AL513302.2-201ENST00000562313 1842 ntBASIC3.23□□□□□ -1.89
RNF4P78317 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
RNF4P78317 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.23□□□□□ -1.89
RNF4P78317 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.23□□□□□ -1.89
RNF4P78317 RNU4-35P-201ENST00000362588 141 ntBASIC3.23□□□□□ -1.89
RNF4P78317 RNU6-81P-201ENST00000365608 104 ntBASIC3.23□□□□□ -1.89
RNF4P78317 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.23□□□□□ -1.89
RNF4P78317 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
RNF4P78317 RNU6-239P-201ENST00000390990 99 ntBASIC3.23□□□□□ -1.89
RNF4P78317 RNU6-383P-201ENST00000410864 94 ntBASIC3.23□□□□□ -1.89
RNF4P78317 AC093578.1-201ENST00000415219 368 ntBASIC3.23□□□□□ -1.89
RNF4P78317 RPS12P18-201ENST00000442381 270 ntBASIC3.23□□□□□ -1.89
RNF4P78317 CYCSP35-201ENST00000451978 304 ntBASIC3.23□□□□□ -1.89
RNF4P78317 AC090515.1-201ENST00000465295 476 ntBASIC3.23□□□□□ -1.89
RNF4P78317 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.23□□□□□ -1.89
RNF4P78317 SCARNA11.3-201ENST00000517276 130 ntBASIC3.23□□□□□ -1.89
RNF4P78317 AC109810.1-201ENST00000534066 224 ntBASIC3.23□□□□□ -1.89
RNF4P78317 MIR4431-201ENST00000579990 94 ntBASIC3.23□□□□□ -1.89
RNF4P78317 MIR3199-1-201ENST00000582434 88 ntBASIC3.23□□□□□ -1.89
RNF4P78317 MIR7515-201ENST00000637837 67 ntBASIC3.23□□□□□ -1.89
RNF4P78317 AC068647.1-201ENST00000489539 2265 ntBASIC3.23□□□□□ -1.89
RNF4P78317 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
RNF4P78317 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
RNF4P78317 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
RNF4P78317 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.23□□□□□ -1.89
RNF4P78317 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.23□□□□□ -1.89
RNF4P78317 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
RNF4P78317 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
RNF4P78317 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
RNF4P78317 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
RNF4P78317 MIR367-201ENST00000362299 68 ntBASIC3.22□□□□□ -1.89
RNF4P78317 DYNLT3P1-201ENST00000378574 347 ntBASIC3.22□□□□□ -1.89
RNF4P78317 AP002088.1-201ENST00000382740 395 ntBASIC3.22□□□□□ -1.89
RNF4P78317 Y_RNA.568-201ENST00000384742 113 ntBASIC3.22□□□□□ -1.89
RNF4P78317 MIR518C-201ENST00000384822 101 ntBASIC3.22□□□□□ -1.89
RNF4P78317 MIR183-201ENST00000384958 110 ntBASIC3.22□□□□□ -1.89
RNF4P78317 MT-TT-201ENST00000387460 66 ntBASIC3.22□□□□□ -1.89
RNF4P78317 MIR526A2-201ENST00000390198 65 ntBASIC3.22□□□□□ -1.89
RNF4P78317 SNORD17-201ENST00000390930 237 ntBASIC3.22□□□□□ -1.89
RNF4P78317 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC3.22□□□□□ -1.89
RNF4P78317 AL137159.1-201ENST00000452808 512 ntBASIC3.22□□□□□ -1.89
RNF4P78317 AC010409.1-201ENST00000487382 476 ntBASIC3.22□□□□□ -1.89
RNF4P78317 AC026333.2-201ENST00000542164 106 ntBASIC3.22□□□□□ -1.89
RNF4P78317 MIR3684-201ENST00000579779 74 ntBASIC3.22□□□□□ -1.89
RNF4P78317 MIR548AY-201ENST00000617669 107 ntBASIC3.22□□□□□ -1.89
RNF4P78317 AC012314.7-201ENST00000619693 93 ntBASIC3.22□□□□□ -1.89
RNF4P78317 MIR3658-201ENST00000636291 56 ntBASIC3.22□□□□□ -1.89
RNF4P78317 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
RNF4P78317 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.22□□□□□ -1.89
RNF4P78317 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.22□□□□□ -1.89
RNF4P78317 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
RNF4P78317 AC103988.1-201ENST00000566382 2177 ntBASIC3.22□□□□□ -1.89
RNF4P78317 KCNJ16-203ENST00000392671 3981 ntAPPRIS P1 TSL 2 BASIC3.22□□□□□ -1.89
RNF4P78317 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
RNF4P78317 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC3.21□□□□□ -1.9
RNF4P78317 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
RNF4P78317 AL356292.1-201ENST00000283110 373 ntBASIC3.21□□□□□ -1.9
RNF4P78317 SNORA27.1-201ENST00000362604 124 ntBASIC3.21□□□□□ -1.9
RNF4P78317 RNA5SP139-201ENST00000364340 117 ntBASIC3.21□□□□□ -1.9
RNF4P78317 Y_RNA.229-201ENST00000364347 113 ntBASIC3.21□□□□□ -1.9
RNF4P78317 RNU6-975P-201ENST00000384296 105 ntBASIC3.21□□□□□ -1.9
RNF4P78317 MIR490-201ENST00000384865 128 ntBASIC3.21□□□□□ -1.9
RNF4P78317 MIR616-201ENST00000385293 97 ntBASIC3.21□□□□□ -1.9
RNF4P78317 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.21□□□□□ -1.9
RNF4P78317 SNORD65B-201ENST00000459126 73 ntBASIC3.21□□□□□ -1.9
RNF4P78317 AC008155.2-201ENST00000464337 397 ntBASIC3.21□□□□□ -1.9
RNF4P78317 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC3.21□□□□□ -1.9
RNF4P78317 AC107027.2-201ENST00000512197 115 ntBASIC3.21□□□□□ -1.9
RNF4P78317 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.21□□□□□ -1.9
RNF4P78317 AC120045.1-201ENST00000563502 251 ntTSL 3 BASIC3.21□□□□□ -1.9
RNF4P78317 AC139426.2-201ENST00000568289 251 ntTSL 3 BASIC3.21□□□□□ -1.9
RNF4P78317 MIR4724-201ENST00000579485 89 ntBASIC3.21□□□□□ -1.9
RNF4P78317 AP005264.4-201ENST00000592203 422 ntTSL 5 BASIC3.21□□□□□ -1.9
RNF4P78317 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC3.21□□□□□ -1.9
RNF4P78317 U6.105-201ENST00000637379 88 ntBASIC3.21□□□□□ -1.9
RNF4P78317 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.21□□□□□ -1.9
RNF4P78317 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.2□□□□□ -1.9
RNF4P78317 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
RNF4P78317 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
RNF4P78317 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
RNF4P78317 SNORD31B-201ENST00000364977 69 ntBASIC3.2□□□□□ -1.9
RNF4P78317 RNU4-11P-201ENST00000365287 132 ntBASIC3.2□□□□□ -1.9
RNF4P78317 RNU6-418P-201ENST00000384035 107 ntBASIC3.2□□□□□ -1.9
RNF4P78317 MIR569-201ENST00000385228 96 ntBASIC3.2□□□□□ -1.9
RNF4P78317 RN7SKP111-201ENST00000410349 271 ntBASIC3.2□□□□□ -1.9
RNF4P78317 AL121914.1-201ENST00000450188 156 ntBASIC3.2□□□□□ -1.9
RNF4P78317 RNU6-221P-201ENST00000459541 99 ntBASIC3.2□□□□□ -1.9
RNF4P78317 RPS26P55-201ENST00000471178 356 ntBASIC3.2□□□□□ -1.9
RNF4P78317 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.2□□□□□ -1.9
RNF4P78317 RNU6-63P-201ENST00000516690 95 ntBASIC3.2□□□□□ -1.9
RNF4P78317 AC022616.8-201ENST00000533569 253 ntBASIC3.2□□□□□ -1.9
RNF4P78317 AC013412.1-201ENST00000610687 192 ntBASIC3.2□□□□□ -1.9
RNF4P78317 AC096577.2-201ENST00000611455 153 ntBASIC3.2□□□□□ -1.9
RNF4P78317 AC022149.2-201ENST00000621061 203 ntBASIC3.2□□□□□ -1.9
RNF4P78317 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.2□□□□□ -1.9
RNF4P78317 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms