Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PDCL2P1-201ENST00000419302 352 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 AC243428.1-201ENST00000421099 264 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 AC139712.2-201ENST00000424302 339 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 RPS3AP52-201ENST00000435639 297 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC1.62□□□□□ -2.15
PTPN4P29074 AC026782.1-201ENST00000512952 449 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 RNU6-1016P-201ENST00000516689 94 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 RNA5SP54-201ENST00000516951 92 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.62□□□□□ -2.15
PTPN4P29074 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.62□□□□□ -2.15
PTPN4P29074 MIR8074-201ENST00000615081 81 ntBASIC1.62□□□□□ -2.15
PTPN4P29074 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.62□□□□□ -2.15
PTPN4P29074 MIR126-201ENST00000362291 85 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 Y_RNA.4-201ENST00000362333 112 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 Y_RNA.166-201ENST00000363730 102 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 RNU5F-3P-201ENST00000363767 117 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 SNORD114-6-201ENST00000364393 72 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 Y_RNA.533-201ENST00000384596 114 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 RNA5SP100-201ENST00000410903 110 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 RNA5SP59-201ENST00000410922 110 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 AC004866.1-201ENST00000411748 78 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 AC074085.1-201ENST00000413598 418 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.61□□□□□ -2.15
PTPN4P29074 BTF3P4-201ENST00000418852 495 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.61□□□□□ -2.15
PTPN4P29074 AC069257.2-201ENST00000441819 155 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 AC004386.2-201ENST00000441858 148 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.61□□□□□ -2.15
PTPN4P29074 AC067942.3-201ENST00000512025 362 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 RNU6-970P-201ENST00000516312 107 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.61□□□□□ -2.15
PTPN4P29074 MIR4273-201ENST00000582824 84 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 AC018462.2-201ENST00000605375 395 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 AC022306.2-201ENST00000617563 647 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.61□□□□□ -2.15
PTPN4P29074 AC099654.14-201ENST00000638599 341 ntBASIC1.61□□□□□ -2.15
PTPN4P29074 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.61□□□□□ -2.15
PTPN4P29074 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.6□□□□□ -2.15
PTPN4P29074 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.6□□□□□ -2.15
PTPN4P29074 Y_RNA.164-201ENST00000363709 102 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 SNORD115-8-201ENST00000363856 82 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 Y_RNA.238-201ENST00000364441 102 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 RNU6-593P-201ENST00000364716 112 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 SNORD115-38-201ENST00000365037 82 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.6□□□□□ -2.15
PTPN4P29074 Y_RNA.390-201ENST00000383932 102 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 Y_RNA.473-201ENST00000384333 102 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 MIR32-201ENST00000384965 70 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 MIR1283-1-201ENST00000408494 87 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 FTH1P12-201ENST00000432137 551 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 MTCO1P44-201ENST00000441935 243 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 AC009237.7-201ENST00000447357 229 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.6□□□□□ -2.15
PTPN4P29074 AC107399.1-201ENST00000451226 265 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 ATP5J2P3-201ENST00000451550 258 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 MTCO3P8-201ENST00000453691 755 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC1.6□□□□□ -2.15
PTPN4P29074 snoU13.30-201ENST00000458951 104 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.6□□□□□ -2.15
PTPN4P29074 RPL30P10-201ENST00000488148 337 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 PRDX4P1-201ENST00000507189 574 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 AC025465.3-201ENST00000510570 311 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.6□□□□□ -2.15
PTPN4P29074 SNORA20.3-201ENST00000516880 132 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 SUB1P4-201ENST00000566062 339 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 7SK.7-201ENST00000603504 247 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 AC069114.2-201ENST00000604699 304 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 AC016925.2-201ENST00000605108 242 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 uc_338.5-201ENST00000611839 155 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 BX322639.1-202ENST00000423987 2213 ntBASIC1.6□□□□□ -2.15
PTPN4P29074 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
PTPN4P29074 AL159152.1-201ENST00000635019 2587 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 ZNF299P-201ENST00000406845 1804 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.59□□□□□ -2.15
PTPN4P29074 RNU6-545P-201ENST00000362681 104 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 Y_RNA.88-201ENST00000363029 99 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 RNU6-595P-201ENST00000363944 107 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.59□□□□□ -2.15
PTPN4P29074 RNU4-62P-201ENST00000410125 130 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 Y_RNA.594-201ENST00000410373 140 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 AC138393.2-201ENST00000414742 246 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 HMGN1P13-201ENST00000505795 138 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 AC103851.1-201ENST00000506833 274 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 AC097473.1-201ENST00000508142 408 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 Y_RNA.670-201ENST00000516255 105 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 RNVU1-2-201ENST00000516326 135 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 RNU6-948P-201ENST00000516374 107 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 Y_RNA.691-201ENST00000516611 103 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 AC005668.1-201ENST00000571142 476 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.59□□□□□ -2.15
PTPN4P29074 MIR5006-201ENST00000583027 110 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.59□□□□□ -2.15
PTPN4P29074 AC083806.3-201ENST00000614016 455 ntBASIC1.59□□□□□ -2.15
PTPN4P29074 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.59□□□□□ -2.15
PTPN4P29074 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.59□□□□□ -2.15
PTPN4P29074 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.59□□□□□ -2.16
PTPN4P29074 ZNF204P-201ENST00000416749 2397 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 166.1 ms