Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 AC004866.1-201ENST00000411748 78 ntBASIC3.73□□□□□ -1.81
LIG1P18858 AL135790.2-201ENST00000437701 267 ntBASIC3.73□□□□□ -1.81
LIG1P18858 UBBP3-201ENST00000445497 241 ntBASIC3.73□□□□□ -1.81
LIG1P18858 snoU13.22-201ENST00000459428 104 ntBASIC3.73□□□□□ -1.81
LIG1P18858 RPL23AP70-201ENST00000483361 460 ntBASIC3.73□□□□□ -1.81
LIG1P18858 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.73□□□□□ -1.81
LIG1P18858 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.73□□□□□ -1.81
LIG1P18858 MIR4276-201ENST00000584832 70 ntBASIC3.73□□□□□ -1.81
LIG1P18858 AC007179.3-201ENST00000604976 235 ntBASIC3.73□□□□□ -1.81
LIG1P18858 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC3.73□□□□□ -1.81
LIG1P18858 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.73□□□□□ -1.81
LIG1P18858 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.72□□□□□ -1.81
LIG1P18858 AC010329.5-201ENST00000623497 2174 ntBASIC3.72□□□□□ -1.81
LIG1P18858 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
LIG1P18858 RNU6-103P-201ENST00000363686 107 ntBASIC3.72□□□□□ -1.81
LIG1P18858 SNORD87-201ENST00000364849 89 ntBASIC3.72□□□□□ -1.81
LIG1P18858 SNORA22C-201ENST00000384614 134 ntBASIC3.72□□□□□ -1.81
LIG1P18858 SNORA26.5-201ENST00000391215 123 ntBASIC3.72□□□□□ -1.81
LIG1P18858 AL031003.1-201ENST00000404229 172 ntBASIC3.72□□□□□ -1.81
LIG1P18858 RN7SKP123-201ENST00000410732 291 ntBASIC3.72□□□□□ -1.81
LIG1P18858 AL513477.1-202ENST00000417061 214 ntBASIC3.72□□□□□ -1.81
LIG1P18858 AC027124.2-201ENST00000428249 105 ntBASIC3.72□□□□□ -1.81
LIG1P18858 CR769767.1-201ENST00000436337 346 ntBASIC3.72□□□□□ -1.81
LIG1P18858 AC004386.2-201ENST00000441858 148 ntBASIC3.72□□□□□ -1.81
LIG1P18858 RPS3P1-201ENST00000456781 192 ntBASIC3.72□□□□□ -1.81
LIG1P18858 BX510359.1-201ENST00000456973 237 ntBASIC3.72□□□□□ -1.81
LIG1P18858 RNU7-23P-201ENST00000459465 62 ntBASIC3.72□□□□□ -1.81
LIG1P18858 AC093663.1-201ENST00000497190 394 ntBASIC3.72□□□□□ -1.81
LIG1P18858 RNA5SP217-201ENST00000515959 91 ntBASIC3.72□□□□□ -1.81
LIG1P18858 AC021269.2-201ENST00000532318 330 ntBASIC3.72□□□□□ -1.81
LIG1P18858 MIR4431-201ENST00000579990 94 ntBASIC3.72□□□□□ -1.81
LIG1P18858 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.72□□□□□ -1.81
LIG1P18858 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.72□□□□□ -1.81
LIG1P18858 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
LIG1P18858 GABRG2-229ENST00000641017 3628 ntBASIC3.72□□□□□ -1.81
LIG1P18858 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC3.72□□□□□ -1.81
LIG1P18858 AC138915.1-201ENST00000565427 1685 ntBASIC3.71□□□□□ -1.81
LIG1P18858 PPIP5K2-203ENST00000414217 5842 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.81
LIG1P18858 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
LIG1P18858 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
LIG1P18858 Y_RNA.81-201ENST00000362997 102 ntBASIC3.71□□□□□ -1.82
LIG1P18858 RNU6-818P-201ENST00000364837 108 ntBASIC3.71□□□□□ -1.82
LIG1P18858 Y_RNA.287-201ENST00000364853 94 ntBASIC3.71□□□□□ -1.82
LIG1P18858 MIR626-201ENST00000385032 94 ntBASIC3.71□□□□□ -1.82
LIG1P18858 MIR569-201ENST00000385228 96 ntBASIC3.71□□□□□ -1.82
LIG1P18858 RNA5SP504-201ENST00000410676 117 ntBASIC3.71□□□□□ -1.82
LIG1P18858 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.71□□□□□ -1.82
LIG1P18858 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.71□□□□□ -1.82
LIG1P18858 TOMM22P2-201ENST00000430735 237 ntBASIC3.71□□□□□ -1.82
LIG1P18858 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.71□□□□□ -1.82
LIG1P18858 RNU6-426P-201ENST00000516464 97 ntBASIC3.71□□□□□ -1.82
LIG1P18858 AC245166.1-201ENST00000521012 253 ntBASIC3.71□□□□□ -1.82
LIG1P18858 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.71□□□□□ -1.82
LIG1P18858 MIR548X2-201ENST00000579776 100 ntBASIC3.71□□□□□ -1.82
LIG1P18858 MIR4744-201ENST00000581563 82 ntBASIC3.71□□□□□ -1.82
LIG1P18858 MIR5006-201ENST00000583027 110 ntBASIC3.71□□□□□ -1.82
LIG1P18858 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.71□□□□□ -1.82
LIG1P18858 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.71□□□□□ -1.82
LIG1P18858 Z83843.1-201ENST00000604070 3685 ntBASIC3.71□□□□□ -1.82
LIG1P18858 AC010889.1-201ENST00000566193 2666 ntBASIC3.71□□□□□ -1.82
LIG1P18858 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LIG1P18858 RNU1-105P-201ENST00000363470 161 ntBASIC3.7□□□□□ -1.82
LIG1P18858 SNORD56.5-201ENST00000364281 72 ntBASIC3.7□□□□□ -1.82
LIG1P18858 RNA5SP267-201ENST00000364893 126 ntBASIC3.7□□□□□ -1.82
LIG1P18858 Y_RNA.368-201ENST00000365547 113 ntBASIC3.7□□□□□ -1.82
LIG1P18858 SNORA72.4-201ENST00000384174 132 ntBASIC3.7□□□□□ -1.82
LIG1P18858 SNORA67.2-201ENST00000384300 149 ntBASIC3.7□□□□□ -1.82
LIG1P18858 RNU6-578P-201ENST00000390980 103 ntBASIC3.7□□□□□ -1.82
LIG1P18858 AL355497.1-201ENST00000406262 551 ntBASIC3.7□□□□□ -1.82
LIG1P18858 RNU6-257P-201ENST00000410238 98 ntBASIC3.7□□□□□ -1.82
LIG1P18858 AC146507.2-201ENST00000460608 476 ntBASIC3.7□□□□□ -1.82
LIG1P18858 DEFB131C-201ENST00000528817 165 ntBASIC3.7□□□□□ -1.82
LIG1P18858 AL137843.1-201ENST00000605078 385 ntBASIC3.7□□□□□ -1.82
LIG1P18858 AC096577.2-201ENST00000611455 153 ntBASIC3.7□□□□□ -1.82
LIG1P18858 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.7□□□□□ -1.82
LIG1P18858 AC010680.1-201ENST00000590024 3590 ntBASIC3.7□□□□□ -1.82
LIG1P18858 AC068700.1-201ENST00000565862 3754 ntBASIC3.7□□□□□ -1.82
LIG1P18858 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LIG1P18858 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.7□□□□□ -1.82
LIG1P18858 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIG1P18858 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
LIG1P18858 Y_RNA.361-201ENST00000365515 120 ntBASIC3.69□□□□□ -1.82
LIG1P18858 SNORA8.3-201ENST00000384679 139 ntBASIC3.69□□□□□ -1.82
LIG1P18858 RNU6-750P-201ENST00000390946 107 ntBASIC3.69□□□□□ -1.82
LIG1P18858 RPL21P3-201ENST00000395517 478 ntBASIC3.69□□□□□ -1.82
LIG1P18858 MIR887-201ENST00000401258 79 ntBASIC3.69□□□□□ -1.82
LIG1P18858 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.69□□□□□ -1.82
LIG1P18858 RNU2-44P-201ENST00000516795 194 ntBASIC3.69□□□□□ -1.82
LIG1P18858 AC069294.1-201ENST00000608397 350 ntBASIC3.69□□□□□ -1.82
LIG1P18858 AL365222.1-201ENST00000614661 98 ntBASIC3.69□□□□□ -1.82
LIG1P18858 AC093831.2-201ENST00000624393 3427 ntBASIC3.69□□□□□ -1.82
LIG1P18858 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIG1P18858 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
LIG1P18858 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIG1P18858 AC000403.1-201ENST00000613696 3585 ntBASIC3.68□□□□□ -1.82
LIG1P18858 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
LIG1P18858 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
LIG1P18858 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.68□□□□□ -1.82
LIG1P18858 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
LIG1P18858 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms