Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AL049830.1-201ENST00000468034 425 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 RPS27P22-201ENST00000478056 241 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 AF186996.7-201ENST00000492781 209 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 AC022493.2-201ENST00000506122 481 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC0.45□□□□□ -2.34
LIMS3P0CW19 RNA5SP454-201ENST00000517231 127 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 AP002001.1-203ENST00000534002 267 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC0.45□□□□□ -2.34
LIMS3P0CW19 MIR5583-1-201ENST00000580941 59 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 MIR4781-201ENST00000585250 76 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 AC009229.3-201ENST00000608056 282 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC0.44□□□□□ -2.34
LIMS3P0CW19 MIR96-201ENST00000362288 78 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 RNU6-1266P-201ENST00000362794 105 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 AL031577.2-201ENST00000404133 280 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC0.44□□□□□ -2.34
LIMS3P0CW19 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.44□□□□□ -2.34
LIMS3P0CW19 AL445305.1-201ENST00000432577 575 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 MTND4P32-201ENST00000437189 1237 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC0.44□□□□□ -2.34
LIMS3P0CW19 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.44□□□□□ -2.34
LIMS3P0CW19 AC245047.8-201ENST00000456455 284 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.44□□□□□ -2.34
LIMS3P0CW19 SNORA14.1-201ENST00000516113 141 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 SCARNA1-201ENST00000517138 166 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 AP000889.1-201ENST00000530968 660 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 HIF1AP1-201ENST00000553642 175 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 SUB1P2-201ENST00000556401 297 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC0.44□□□□□ -2.34
LIMS3P0CW19 MTND1P15-201ENST00000579262 949 ntBASIC0.44□□□□□ -2.34
LIMS3P0CW19 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC0.43□□□□□ -2.34
LIMS3P0CW19 RNU6-1317P-201ENST00000364582 104 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 RNU6-424P-201ENST00000384367 105 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 MIR1185-2-201ENST00000408687 86 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 RNA5SP504-201ENST00000410676 117 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 BX295541.1-201ENST00000417774 250 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 NDUFB4P10-201ENST00000452541 359 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 LINC01399-202ENST00000458450 244 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.43□□□□□ -2.34
LIMS3P0CW19 MTND3P3-201ENST00000505004 126 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 TRMT112P2-201ENST00000512910 132 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 RNU6-430P-201ENST00000517078 107 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.43□□□□□ -2.34
LIMS3P0CW19 MTND1P35-201ENST00000526739 508 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC0.43□□□□□ -2.34
LIMS3P0CW19 AC018659.1-201ENST00000551083 169 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 SCOCP1-201ENST00000554676 349 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.43□□□□□ -2.34
LIMS3P0CW19 AC133485.1-201ENST00000567176 124 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 AC138907.6-201ENST00000568401 126 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 BNIP3P10-201ENST00000605360 577 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 AC008536.2-201ENST00000607284 349 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 AC064836.2-201ENST00000609491 462 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 OR5AK4P-201ENST00000635912 903 ntBASIC0.43□□□□□ -2.34
LIMS3P0CW19 RNU6-1120P-201ENST00000362988 108 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 RNA5SP499-201ENST00000363982 119 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0.42□□□□□ -2.34
LIMS3P0CW19 RNU6-245P-201ENST00000384020 107 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 RNU6-297P-201ENST00000384636 107 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 RNA5SP219-201ENST00000390940 113 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.42□□□□□ -2.34
LIMS3P0CW19 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.42□□□□□ -2.34
LIMS3P0CW19 TPT1P7-201ENST00000458300 517 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 RNU7-180P-201ENST00000459240 63 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 RNA5SP54-201ENST00000516951 92 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 AC087854.1-201ENST00000519706 414 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 AC008015.1-201ENST00000555505 465 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC0.42□□□□□ -2.34
LIMS3P0CW19 AC004832.4-201ENST00000608952 331 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 AL360219.1-201ENST00000610230 366 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 uc_338.34-201ENST00000617467 174 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 FER-210ENST00000628534 558 ntTSL 5 BASIC0.42□□□□□ -2.34
LIMS3P0CW19 ELL2P3-201ENST00000457883 1602 ntBASIC0.42□□□□□ -2.34
LIMS3P0CW19 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.41□□□□□ -2.34
LIMS3P0CW19 U8.16-201ENST00000391279 133 ntBASIC0.41□□□□□ -2.34
LIMS3P0CW19 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC0.41□□□□□ -2.34
LIMS3P0CW19 AL049545.1-201ENST00000401856 572 ntBASIC0.41□□□□□ -2.34
LIMS3P0CW19 CYCSP46-201ENST00000423569 204 ntBASIC0.41□□□□□ -2.34
LIMS3P0CW19 CALM2P4-201ENST00000430810 426 ntBASIC0.41□□□□□ -2.34
LIMS3P0CW19 RNU6-1129P-201ENST00000515964 104 ntBASIC0.41□□□□□ -2.34
LIMS3P0CW19 MTND1P5-201ENST00000517906 940 ntBASIC0.41□□□□□ -2.34
LIMS3P0CW19 MTND4P7-201ENST00000523876 130 ntBASIC0.41□□□□□ -2.34
LIMS3P0CW19 MDM2-233ENST00000545204 398 ntTSL 5 BASIC0.41□□□□□ -2.34
LIMS3P0CW19 MTATP6P3-201ENST00000581686 676 ntBASIC0.41□□□□□ -2.34
LIMS3P0CW19 AC025627.3-201ENST00000582078 182 ntBASIC0.41□□□□□ -2.34
LIMS3P0CW19 AL391903.3-201ENST00000612158 163 ntBASIC0.41□□□□□ -2.34
LIMS3P0CW19 AC016597.2-201ENST00000613256 341 ntBASIC0.41□□□□□ -2.34
LIMS3P0CW19 SNORD18A-201ENST00000363753 72 ntBASIC0.4□□□□□ -2.35
LIMS3P0CW19 Y_RNA.265-201ENST00000364677 108 ntBASIC0.4□□□□□ -2.35
LIMS3P0CW19 RNU1-93P-201ENST00000364704 169 ntBASIC0.4□□□□□ -2.35
LIMS3P0CW19 RNU6-163P-201ENST00000384396 106 ntBASIC0.4□□□□□ -2.35
LIMS3P0CW19 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.4□□□□□ -2.35
LIMS3P0CW19 U7.7-201ENST00000459276 60 ntBASIC0.4□□□□□ -2.35
LIMS3P0CW19 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.4□□□□□ -2.35
LIMS3P0CW19 AC027419.1-201ENST00000522976 328 ntBASIC0.4□□□□□ -2.35
LIMS3P0CW19 CYP3A137P-201ENST00000562436 69 ntBASIC0.4□□□□□ -2.35
LIMS3P0CW19 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC0.4□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 257 ms