Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC138305.3-201ENST00000624988 240 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.85□□□□□ -2.11
HOXD4P09016 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC1.85□□□□□ -2.11
HOXD4P09016 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.85□□□□□ -2.11
HOXD4P09016 Y_RNA.28-201ENST00000362554 111 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 RNU6-944P-201ENST00000364023 107 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 Y_RNA.319-201ENST00000365138 92 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 Y_RNA.326-201ENST00000365176 113 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 MIR561-201ENST00000385216 97 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
HOXD4P09016 AC096644.2-201ENST00000429278 159 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 CEP57L1P1-201ENST00000430943 1201 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 AL445305.1-201ENST00000432577 575 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 U8.22-201ENST00000459141 133 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 RNA5SP233-201ENST00000459153 113 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 RNU7-87P-201ENST00000459343 62 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 AP000870.1-201ENST00000472927 406 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 RNU4-77P-201ENST00000516692 156 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 RNU7-193P-201ENST00000516723 65 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 RNU7-4P-201ENST00000516961 62 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.85□□□□□ -2.11
HOXD4P09016 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.85□□□□□ -2.11
HOXD4P09016 AC078899.2-201ENST00000595282 212 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.85□□□□□ -2.11
HOXD4P09016 AC137590.2-201ENST00000619709 240 ntBASIC1.85□□□□□ -2.11
HOXD4P09016 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.85□□□□□ -2.11
HOXD4P09016 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.84□□□□□ -2.11
HOXD4P09016 MTND5P16-201ENST00000460269 1703 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 SNORA63-201ENST00000363450 132 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 U3.9-201ENST00000363823 204 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 Y_RNA.238-201ENST00000364441 102 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 RNU1-115P-201ENST00000365329 160 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 Y_RNA.358-201ENST00000365491 99 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 Y_RNA.364-201ENST00000365532 101 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 MIR29B2-201ENST00000385055 81 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 Y_RNA.597-201ENST00000410463 100 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.84□□□□□ -2.11
HOXD4P09016 AL590556.1-201ENST00000423231 483 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 USP9YP16-201ENST00000430287 407 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.84□□□□□ -2.11
HOXD4P09016 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.84□□□□□ -2.11
HOXD4P09016 USP9YP23-201ENST00000455085 407 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.84□□□□□ -2.11
HOXD4P09016 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.84□□□□□ -2.11
HOXD4P09016 RNU6-58P-201ENST00000517143 103 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 RNU6-586P-201ENST00000517265 104 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 EIF4A1P12-201ENST00000551910 141 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 UBL5P4-201ENST00000562584 236 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.84□□□□□ -2.11
HOXD4P09016 MIR3126-201ENST00000577443 74 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 MIR5002-201ENST00000584713 97 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 AC008749.1-201ENST00000597650 306 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 AP000942.3-201ENST00000603702 160 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 AC016727.2-201ENST00000603988 621 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 SNORD58B-201ENST00000607313 66 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 AC040896.1-201ENST00000613819 479 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 AC083806.3-201ENST00000614016 455 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 MIR4272-201ENST00000635924 64 ntBASIC1.84□□□□□ -2.11
HOXD4P09016 Y_RNA.80-201ENST00000362996 102 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 SNORD115-8-201ENST00000363856 82 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 SNORD32B-201ENST00000364460 84 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 SNORD115-38-201ENST00000365037 82 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 Y_RNA.485-201ENST00000384395 102 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 RNU6-541P-201ENST00000384709 110 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 MIR583-201ENST00000384846 75 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 MIR17-201ENST00000385012 84 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
HOXD4P09016 SNORA69.1-201ENST00000390904 137 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.83□□□□□ -2.12
HOXD4P09016 Y_RNA.592-201ENST00000410274 109 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 Y_RNA.605-201ENST00000410577 105 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 EDDM3CP-201ENST00000415977 425 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 AL160004.2-201ENST00000432935 350 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC1.83□□□□□ -2.12
HOXD4P09016 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC1.83□□□□□ -2.12
HOXD4P09016 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.83□□□□□ -2.12
HOXD4P09016 RNA5SP137-201ENST00000516833 135 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 SNORA31.25-201ENST00000517242 134 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 RNU6-988P-201ENST00000519081 107 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
HOXD4P09016 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.83□□□□□ -2.12
HOXD4P09016 DEFB131C-201ENST00000528817 165 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 AC090617.3-201ENST00000573670 475 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.83□□□□□ -2.12
HOXD4P09016 AC022432.1-201ENST00000595739 310 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.83□□□□□ -2.12
HOXD4P09016 AC016925.2-201ENST00000605108 242 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.83□□□□□ -2.12
HOXD4P09016 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 AC009487.4-201ENST00000624969 3585 ntBASIC1.83□□□□□ -2.12
HOXD4P09016 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
HOXD4P09016 Y_RNA.39-201ENST00000362620 98 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 RNU1-23P-201ENST00000363361 144 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 Y_RNA.140-201ENST00000363474 103 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 RNA5SP160-201ENST00000364866 120 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 Y_RNA.338-201ENST00000365320 114 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 SNORA33.2-201ENST00000365413 134 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 Y_RNA.557-201ENST00000384680 107 ntBASIC1.82□□□□□ -2.12
HOXD4P09016 MIR10B-201ENST00000385011 110 ntBASIC1.82□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 167.5 ms