Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC-0.45□□□□□ -2.48
TNFP01375 AL590491.3-201ENST00000610731 82 ntBASIC-0.45□□□□□ -2.48
TNFP01375 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC-0.45□□□□□ -2.48
TNFP01375 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC-0.45□□□□□ -2.48
TNFP01375 AC006001.4-201ENST00000622243 395 ntBASIC-0.45□□□□□ -2.48
TNFP01375 RNU6-428P-201ENST00000362942 107 ntBASIC-0.46□□□□□ -2.48
TNFP01375 RNU6-527P-201ENST00000363425 104 ntBASIC-0.46□□□□□ -2.48
TNFP01375 RNU6-105P-201ENST00000363909 104 ntBASIC-0.46□□□□□ -2.48
TNFP01375 RNU6-1141P-201ENST00000364520 107 ntBASIC-0.46□□□□□ -2.48
TNFP01375 Y_RNA.362-201ENST00000365518 110 ntBASIC-0.46□□□□□ -2.48
TNFP01375 RNU6-975P-201ENST00000384296 105 ntBASIC-0.46□□□□□ -2.48
TNFP01375 RNU6-692P-201ENST00000384496 107 ntBASIC-0.46□□□□□ -2.48
TNFP01375 RPS3AP3-201ENST00000411933 242 ntBASIC-0.46□□□□□ -2.48
TNFP01375 LINC00387-201ENST00000422609 458 ntTSL 5 BASIC-0.46□□□□□ -2.48
TNFP01375 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC-0.46□□□□□ -2.48
TNFP01375 AC015818.7-201ENST00000428754 109 ntBASIC-0.46□□□□□ -2.48
TNFP01375 AC087499.7-201ENST00000441958 109 ntBASIC-0.46□□□□□ -2.48
TNFP01375 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC-0.46□□□□□ -2.48
TNFP01375 AC007327.1-201ENST00000447461 264 ntBASIC-0.46□□□□□ -2.48
TNFP01375 AC007215.1-201ENST00000464893 276 ntBASIC-0.46□□□□□ -2.48
TNFP01375 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC-0.46□□□□□ -2.48
TNFP01375 AC093303.1-201ENST00000514549 295 ntBASIC-0.46□□□□□ -2.48
TNFP01375 Y_RNA.689-201ENST00000516589 107 ntBASIC-0.46□□□□□ -2.48
TNFP01375 RNU1-142P-201ENST00000516682 145 ntBASIC-0.46□□□□□ -2.48
TNFP01375 AC007751.1-201ENST00000529260 376 ntBASIC-0.46□□□□□ -2.48
TNFP01375 DEFB130C-202ENST00000530001 230 ntBASIC-0.46□□□□□ -2.48
TNFP01375 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC-0.46□□□□□ -2.48
TNFP01375 MIR4743-201ENST00000584576 69 ntBASIC-0.46□□□□□ -2.48
TNFP01375 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.46□□□□□ -2.48
TNFP01375 AL162424.1-201ENST00000602325 221 ntBASIC-0.46□□□□□ -2.48
TNFP01375 DEFB131E-202ENST00000602581 683 ntBASIC-0.46□□□□□ -2.48
TNFP01375 AC023158.2-201ENST00000614876 543 ntBASIC-0.46□□□□□ -2.48
TNFP01375 AC026585.1-201ENST00000619582 524 ntBASIC-0.46□□□□□ -2.48
TNFP01375 FER-210ENST00000628534 558 ntTSL 5 BASIC-0.46□□□□□ -2.48
TNFP01375 VPS35-212ENST00000640313 141 ntTSL 5 BASIC-0.46□□□□□ -2.48
TNFP01375 RNU6-792P-201ENST00000363490 107 ntBASIC-0.47□□□□□ -2.48
TNFP01375 RNU6-946P-201ENST00000383878 107 ntBASIC-0.47□□□□□ -2.48
TNFP01375 MIR549A-201ENST00000385268 96 ntBASIC-0.47□□□□□ -2.48
TNFP01375 MIR300-201ENST00000401138 83 ntBASIC-0.47□□□□□ -2.48
TNFP01375 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.47□□□□□ -2.48
TNFP01375 AL354692.1-201ENST00000423044 315 ntBASIC-0.47□□□□□ -2.48
TNFP01375 AC004854.1-201ENST00000440356 349 ntBASIC-0.47□□□□□ -2.48
TNFP01375 AL360271.2-201ENST00000447710 161 ntBASIC-0.47□□□□□ -2.48
TNFP01375 PAXBP1P1-201ENST00000449315 447 ntBASIC-0.47□□□□□ -2.48
TNFP01375 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC-0.47□□□□□ -2.48
TNFP01375 RNU6-948P-201ENST00000516374 107 ntBASIC-0.47□□□□□ -2.48
TNFP01375 RNU6-180P-201ENST00000516697 61 ntBASIC-0.47□□□□□ -2.48
TNFP01375 RNU6-782P-201ENST00000516852 104 ntBASIC-0.47□□□□□ -2.48
TNFP01375 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC-0.47□□□□□ -2.48
TNFP01375 AC026616.1-201ENST00000523157 525 ntBASIC-0.47□□□□□ -2.48
TNFP01375 AP002453.2-201ENST00000533503 320 ntBASIC-0.47□□□□□ -2.48
TNFP01375 AC093027.1-201ENST00000546698 429 ntBASIC-0.47□□□□□ -2.48
TNFP01375 MIR548AO-201ENST00000579992 96 ntBASIC-0.47□□□□□ -2.48
TNFP01375 MIR4432-201ENST00000581823 84 ntBASIC-0.47□□□□□ -2.48
TNFP01375 AC174048.1-201ENST00000603389 144 ntBASIC-0.47□□□□□ -2.48
TNFP01375 U4.7-201ENST00000638126 106 ntBASIC-0.47□□□□□ -2.48
TNFP01375 Y_RNA.178-201ENST00000363832 102 ntBASIC-0.48□□□□□ -2.49
TNFP01375 SNORD32A-201ENST00000364805 84 ntBASIC-0.48□□□□□ -2.49
TNFP01375 RNU6-480P-201ENST00000384332 107 ntBASIC-0.48□□□□□ -2.49
TNFP01375 RNU6-1179P-201ENST00000384667 107 ntBASIC-0.48□□□□□ -2.49
TNFP01375 MIR224-201ENST00000384889 81 ntBASIC-0.48□□□□□ -2.49
TNFP01375 RNA5SP95-201ENST00000410319 137 ntBASIC-0.48□□□□□ -2.49
TNFP01375 RNU2-59P-201ENST00000410482 191 ntBASIC-0.48□□□□□ -2.49
TNFP01375 RNA5SP451-201ENST00000410588 110 ntBASIC-0.48□□□□□ -2.49
TNFP01375 SNRPGP7-201ENST00000469016 106 ntBASIC-0.48□□□□□ -2.49
TNFP01375 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC-0.48□□□□□ -2.49
TNFP01375 AC114755.3-201ENST00000481111 251 ntBASIC-0.48□□□□□ -2.49
TNFP01375 RNU7-41P-201ENST00000515917 61 ntBASIC-0.48□□□□□ -2.49
TNFP01375 RNU6-63P-201ENST00000516690 95 ntBASIC-0.48□□□□□ -2.49
TNFP01375 RNA5SP169-201ENST00000517268 117 ntBASIC-0.48□□□□□ -2.49
TNFP01375 MTCO3P15-201ENST00000526563 574 ntBASIC-0.48□□□□□ -2.49
TNFP01375 AP001328.1-201ENST00000528550 176 ntBASIC-0.48□□□□□ -2.49
TNFP01375 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC-0.48□□□□□ -2.49
TNFP01375 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC-0.48□□□□□ -2.49
TNFP01375 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC-0.48□□□□□ -2.49
TNFP01375 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC-0.48□□□□□ -2.49
TNFP01375 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC-0.48□□□□□ -2.49
TNFP01375 Z99497.2-201ENST00000603634 310 ntBASIC-0.48□□□□□ -2.49
TNFP01375 AL158042.1-201ENST00000605338 460 ntBASIC-0.48□□□□□ -2.49
TNFP01375 PART1_2.1-201ENST00000612397 250 ntBASIC-0.48□□□□□ -2.49
TNFP01375 AL359075.3-201ENST00000613288 217 ntBASIC-0.48□□□□□ -2.49
TNFP01375 AC005520.5-201ENST00000613926 164 ntBASIC-0.48□□□□□ -2.49
TNFP01375 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-0.48□□□□□ -2.49
TNFP01375 AP002782.1-201ENST00000623107 614 ntBASIC-0.48□□□□□ -2.49
TNFP01375 MIR16-2-201ENST00000362117 81 ntBASIC-0.49□□□□□ -2.49
TNFP01375 Y_RNA.423-201ENST00000384057 113 ntBASIC-0.49□□□□□ -2.49
TNFP01375 RNU6-1245P-201ENST00000411130 106 ntBASIC-0.49□□□□□ -2.49
TNFP01375 RNU6-1304P-201ENST00000411374 106 ntBASIC-0.49□□□□□ -2.49
TNFP01375 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-0.49□□□□□ -2.49
TNFP01375 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC-0.49□□□□□ -2.49
TNFP01375 MTCO1P20-201ENST00000425366 358 ntBASIC-0.49□□□□□ -2.49
TNFP01375 DEFB130D-201ENST00000426866 237 ntBASIC-0.49□□□□□ -2.49
TNFP01375 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC-0.49□□□□□ -2.49
TNFP01375 AL392103.1-201ENST00000447000 198 ntBASIC-0.49□□□□□ -2.49
TNFP01375 OFD1P4Y-201ENST00000455273 1179 ntBASIC-0.49□□□□□ -2.49
TNFP01375 RNU7-159P-201ENST00000459284 62 ntBASIC-0.49□□□□□ -2.49
TNFP01375 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC-0.49□□□□□ -2.49
TNFP01375 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC-0.49□□□□□ -2.49
TNFP01375 AL391840.1-201ENST00000571144 367 ntBASIC-0.49□□□□□ -2.49
TNFP01375 MIR548AC-201ENST00000585049 88 ntBASIC-0.49□□□□□ -2.49
Retrieved 100 of 98,524 protein–RNA pairs in 114.3 ms