Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 SEPT14P4-201ENST00000513445 186 ntBASIC0.85□□□□□ -2.27
CPSF4O95639 Y_RNA.665-201ENST00000516177 98 ntBASIC0.85□□□□□ -2.27
CPSF4O95639 AC019176.1-201ENST00000518519 225 ntBASIC0.85□□□□□ -2.27
CPSF4O95639 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.85□□□□□ -2.27
CPSF4O95639 FO082796.1-201ENST00000523795 183 ntBASIC0.85□□□□□ -2.27
CPSF4O95639 AC015688.6-201ENST00000577737 104 ntBASIC0.85□□□□□ -2.27
CPSF4O95639 PIGPP4-201ENST00000584447 307 ntBASIC0.85□□□□□ -2.27
CPSF4O95639 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC0.84□□□□□ -2.27
CPSF4O95639 Y_RNA.287-201ENST00000364853 94 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 RNU6-128P-201ENST00000383976 107 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 RNU6-790P-201ENST00000384479 105 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 RNU6-417P-201ENST00000384712 107 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 MIR194-1-201ENST00000384892 85 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 MRPL35P1-201ENST00000404272 572 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 RNU2-16P-201ENST00000410712 136 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 Z82205.1-201ENST00000428456 297 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 NDUFA5P4-201ENST00000436704 385 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.84□□□□□ -2.27
CPSF4O95639 AC079354.2-201ENST00000453523 154 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 AL163540.1-201ENST00000485382 386 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 AC079140.2-201ENST00000506193 142 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC0.84□□□□□ -2.27
CPSF4O95639 RAB11AP2-201ENST00000545905 639 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 ZNF519P2-201ENST00000557032 169 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 NBR2-204ENST00000587322 63 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 AL162413.1-201ENST00000603198 110 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 DISC2.1-201ENST00000612827 205 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 AC137590.2-201ENST00000619709 240 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.84□□□□□ -2.27
CPSF4O95639 AL121890.5-201ENST00000620848 304 ntBASIC0.84□□□□□ -2.27
CPSF4O95639 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
CPSF4O95639 SNORA72.2-201ENST00000365028 127 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 RNU6-95P-201ENST00000384697 107 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 RNA5SP467-201ENST00000391274 118 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AL590002.1-201ENST00000406554 418 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 RNA5SP504-201ENST00000410676 117 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AC016909.1-201ENST00000415916 166 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 COX6CP10-201ENST00000416832 224 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AL590632.1-201ENST00000424289 371 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AL353572.1-201ENST00000442490 417 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AC074290.1-201ENST00000448883 135 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.83□□□□□ -2.28
CPSF4O95639 RPS27P1-201ENST00000450552 247 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC0.83□□□□□ -2.28
CPSF4O95639 MTND1P11-201ENST00000456661 876 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 HMGN2P26-201ENST00000463169 339 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 RPS23P4-201ENST00000487908 423 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC0.83□□□□□ -2.28
CPSF4O95639 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.83□□□□□ -2.28
CPSF4O95639 RNU6-1146P-201ENST00000516282 102 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 RNU1-117P-201ENST00000517041 158 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 MTND1P5-201ENST00000517906 940 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.83□□□□□ -2.28
CPSF4O95639 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.83□□□□□ -2.28
CPSF4O95639 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.83□□□□□ -2.28
CPSF4O95639 AC005668.1-201ENST00000571142 476 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 MIR3937-201ENST00000580135 106 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 MIR4742-201ENST00000581069 85 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AC104984.5-201ENST00000586878 94 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AC097065.2-201ENST00000608159 533 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AL078596.1-201ENST00000624856 447 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 AC008873.1-201ENST00000625051 138 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.83□□□□□ -2.28
CPSF4O95639 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC0.83□□□□□ -2.28
CPSF4O95639 MTND5P35-201ENST00000557537 1720 ntBASIC0.83□□□□□ -2.28
CPSF4O95639 Y_RNA.38-201ENST00000362617 102 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 SNORA25.8-201ENST00000364831 128 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 RNU6-534P-201ENST00000364877 106 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 Y_RNA.559-201ENST00000384686 107 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 MIR618-201ENST00000385287 98 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 RNA5SP109-201ENST00000391010 116 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 MIR1253-201ENST00000408273 105 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 MIR320B2-201ENST00000408479 138 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC0.82□□□□□ -2.28
CPSF4O95639 Z82188.1-201ENST00000436709 154 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 PCMTD1P1-201ENST00000455560 355 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 RNU7-66P-201ENST00000459469 62 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 HMGN1P12-201ENST00000499125 195 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 MTCO2P30-201ENST00000503662 364 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 RNU6-344P-201ENST00000516635 111 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 AC025647.1-201ENST00000517879 253 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 AL442163.3-201ENST00000554110 156 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 MIR4709-201ENST00000577272 72 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 MIR4698-201ENST00000577795 80 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.82□□□□□ -2.28
CPSF4O95639 AC103591.3-201ENST00000608684 209 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 AL138726.1-201ENST00000614873 333 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 AL078604.3-201ENST00000615580 211 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 snoZ196.1-201ENST00000625269 89 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 AC099654.12-201ENST00000639868 649 ntBASIC0.82□□□□□ -2.28
CPSF4O95639 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.82□□□□□ -2.28
CPSF4O95639 SNORD33-201ENST00000362761 85 ntBASIC0.81□□□□□ -2.28
CPSF4O95639 RNU6-451P-201ENST00000362921 107 ntBASIC0.81□□□□□ -2.28
CPSF4O95639 RNU1-22P-201ENST00000363334 158 ntBASIC0.81□□□□□ -2.28
CPSF4O95639 Y_RNA.256-201ENST00000364594 104 ntBASIC0.81□□□□□ -2.28
CPSF4O95639 MIR515-2-201ENST00000384883 83 ntBASIC0.81□□□□□ -2.28
CPSF4O95639 MIR515-1-201ENST00000384884 83 ntBASIC0.81□□□□□ -2.28
CPSF4O95639 MIR32-201ENST00000384965 70 ntBASIC0.81□□□□□ -2.28
CPSF4O95639 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 110.4 ms