Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 FAM157A-202ENST00000615155 405 ntBASIC1.21□□□□□ -2.22
CLDN9O95484 AC073534.2-201ENST00000620377 381 ntBASIC1.21□□□□□ -2.22
CLDN9O95484 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.21□□□□□ -2.22
CLDN9O95484 MTND5P26-201ENST00000426018 1752 ntBASIC1.21□□□□□ -2.22
CLDN9O95484 ZNF204P-201ENST00000416749 2397 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 OR4G1P-203ENST00000641984 1631 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 Y_RNA.231-201ENST00000364358 102 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 RNU6-417P-201ENST00000384712 107 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 MIR586-201ENST00000385035 97 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.2□□□□□ -2.22
CLDN9O95484 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1.2□□□□□ -2.22
CLDN9O95484 RPS29P29-201ENST00000456396 171 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 RPS26P45-201ENST00000471748 340 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 AC083904.1-201ENST00000487828 231 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.2□□□□□ -2.22
CLDN9O95484 RNU1-117P-201ENST00000517041 158 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.2□□□□□ -2.22
CLDN9O95484 AC005668.1-201ENST00000571142 476 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 CPDP1-201ENST00000579660 283 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.2□□□□□ -2.22
CLDN9O95484 AC100830.2-201ENST00000581636 240 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 AC011712.1-201ENST00000588959 234 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 AL078596.1-201ENST00000624856 447 ntBASIC1.2□□□□□ -2.22
CLDN9O95484 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.2□□□□□ -2.22
CLDN9O95484 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
CLDN9O95484 RNU6-784P-201ENST00000384330 106 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 RNU6-1065P-201ENST00000384513 106 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 MIR515-2-201ENST00000384883 83 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 MIR515-1-201ENST00000384884 83 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 RNA5SP323-201ENST00000391094 133 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 SNRPEP10-201ENST00000420249 274 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC1.19□□□□□ -2.22
CLDN9O95484 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.19□□□□□ -2.22
CLDN9O95484 RNU7-57P-201ENST00000459540 60 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 AC092991.1-201ENST00000477176 376 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 RNU6-405P-201ENST00000516637 110 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 AC026371.1-201ENST00000551867 419 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 AC019288.1-201ENST00000557918 224 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.19□□□□□ -2.22
CLDN9O95484 AC097065.2-201ENST00000608159 533 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.19□□□□□ -2.22
CLDN9O95484 AC091895.1-201ENST00000624494 256 ntBASIC1.19□□□□□ -2.22
CLDN9O95484 RNU6-522P-201ENST00000364497 107 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 RNU6-534P-201ENST00000364877 106 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 RNU6-259P-201ENST00000383999 107 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 MIR194-1-201ENST00000384892 85 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.18□□□□□ -2.22
CLDN9O95484 MTCO3P40-201ENST00000392516 676 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 RNU6-1068P-201ENST00000410958 103 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 EIF1P1-201ENST00000421436 341 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.18□□□□□ -2.22
CLDN9O95484 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.18□□□□□ -2.22
CLDN9O95484 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.18□□□□□ -2.22
CLDN9O95484 RPL23AP75-201ENST00000491601 451 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.18□□□□□ -2.22
CLDN9O95484 HMGN1P12-201ENST00000499125 195 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 Y_RNA.688-201ENST00000516565 95 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 AC090821.2-201ENST00000523552 176 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.18□□□□□ -2.22
CLDN9O95484 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.18□□□□□ -2.22
CLDN9O95484 AC004492.1-201ENST00000607036 742 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 AL365434.2-201ENST00000607979 234 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 AC137590.2-201ENST00000619709 240 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.18□□□□□ -2.22
CLDN9O95484 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.18□□□□□ -2.22
CLDN9O95484 AC091812.1-201ENST00000432235 1948 ntBASIC1.18□□□□□ -2.22
CLDN9O95484 Y_RNA.287-201ENST00000364853 94 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 SNORD116-9-201ENST00000384000 95 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 SNORD116-3-201ENST00000384287 95 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 SNORD116-7-201ENST00000384404 95 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 SNORD116-5-201ENST00000384462 95 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 RNU6-790P-201ENST00000384479 105 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 MIR625-201ENST00000385047 85 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 MIR513A1-201ENST00000385138 129 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 RNA5SP467-201ENST00000391274 118 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 CALM2P3-201ENST00000400429 449 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 RNU7-187P-201ENST00000458985 68 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 RPL31P58-201ENST00000469001 379 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 RPL30P7-201ENST00000479312 323 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 RN7SKP179-201ENST00000516126 217 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 RNU6-1223P-201ENST00000517124 104 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 CYP3A52P-201ENST00000563326 91 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 AC073413.2-201ENST00000604332 360 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 RNU6-89P-201ENST00000606519 100 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 AL133215.3-201ENST00000609801 448 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 MIR6078-201ENST00000611069 100 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 AC040896.1-201ENST00000613819 479 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 AC008873.1-201ENST00000625051 138 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 snoZ196.1-201ENST00000625269 89 ntBASIC1.17□□□□□ -2.22
CLDN9O95484 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.17□□□□□ -2.22
CLDN9O95484 SNORD113-7-201ENST00000363762 77 ntBASIC1.16□□□□□ -2.22
CLDN9O95484 Y_RNA.354-201ENST00000365448 111 ntBASIC1.16□□□□□ -2.22
CLDN9O95484 RNA5SP109-201ENST00000391010 116 ntBASIC1.16□□□□□ -2.22
CLDN9O95484 RNU2-66P-201ENST00000410650 161 ntBASIC1.16□□□□□ -2.22
CLDN9O95484 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.16□□□□□ -2.22
CLDN9O95484 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.16□□□□□ -2.22
CLDN9O95484 SNX2P2-201ENST00000424553 323 ntBASIC1.16□□□□□ -2.22
CLDN9O95484 MTCO1P20-201ENST00000425366 358 ntBASIC1.16□□□□□ -2.22
CLDN9O95484 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.16□□□□□ -2.22
CLDN9O95484 LINC01807-201ENST00000432481 676 ntTSL 3 BASIC1.16□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 99.4 ms