Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RRN3P3-201ENST00000549207 578 ntBASIC1.55□□□□□ -2.16
SDC3O75056 SNORA59B-202ENST00000578183 701 ntBASIC1.55□□□□□ -2.16
SDC3O75056 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.55□□□□□ -2.16
SDC3O75056 uc_338.5-201ENST00000611839 155 ntBASIC1.55□□□□□ -2.16
SDC3O75056 AC083806.3-201ENST00000614016 455 ntBASIC1.55□□□□□ -2.16
SDC3O75056 MIR8070-201ENST00000616510 88 ntBASIC1.55□□□□□ -2.16
SDC3O75056 AC009248.2-201ENST00000619826 254 ntBASIC1.55□□□□□ -2.16
SDC3O75056 AC008873.1-201ENST00000625051 138 ntBASIC1.55□□□□□ -2.16
SDC3O75056 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.55□□□□□ -2.16
SDC3O75056 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.55□□□□□ -2.16
SDC3O75056 AC027514.1-201ENST00000588561 1603 ntBASIC1.55□□□□□ -2.16
SDC3O75056 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
SDC3O75056 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.54□□□□□ -2.16
SDC3O75056 AL391987.6-201ENST00000305671 199 ntBASIC1.54□□□□□ -2.16
SDC3O75056 RNY1P10-201ENST00000363268 113 ntBASIC1.54□□□□□ -2.16
SDC3O75056 RNA5SP363-201ENST00000365072 115 ntBASIC1.54□□□□□ -2.16
SDC3O75056 RNU6-975P-201ENST00000384296 105 ntBASIC1.54□□□□□ -2.16
SDC3O75056 MIR487A-201ENST00000385009 80 ntBASIC1.54□□□□□ -2.16
SDC3O75056 MIR153-2-201ENST00000385225 87 ntBASIC1.54□□□□□ -2.16
SDC3O75056 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.54□□□□□ -2.16
SDC3O75056 AC004965.1-201ENST00000413033 213 ntBASIC1.54□□□□□ -2.16
SDC3O75056 AC243428.1-201ENST00000421099 264 ntBASIC1.54□□□□□ -2.16
SDC3O75056 AL139396.1-201ENST00000421137 167 ntBASIC1.54□□□□□ -2.16
SDC3O75056 MTATP6P13-201ENST00000438531 667 ntBASIC1.54□□□□□ -2.16
SDC3O75056 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.54□□□□□ -2.16
SDC3O75056 ATP5J2P3-201ENST00000451550 258 ntBASIC1.54□□□□□ -2.16
SDC3O75056 AC114982.1-201ENST00000469402 321 ntBASIC1.54□□□□□ -2.16
SDC3O75056 HMGN2P9-201ENST00000476875 229 ntBASIC1.54□□□□□ -2.16
SDC3O75056 AC027575.1-201ENST00000481064 460 ntBASIC1.54□□□□□ -2.16
SDC3O75056 HMGN1P13-201ENST00000505795 138 ntBASIC1.54□□□□□ -2.16
SDC3O75056 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.54□□□□□ -2.16
SDC3O75056 RNU6-948P-201ENST00000516374 107 ntBASIC1.54□□□□□ -2.16
SDC3O75056 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.54□□□□□ -2.16
SDC3O75056 AC060780.3-201ENST00000589464 80 ntBASIC1.54□□□□□ -2.16
SDC3O75056 AL353149.1-201ENST00000610667 244 ntBASIC1.54□□□□□ -2.16
SDC3O75056 MIR8074-201ENST00000615081 81 ntBASIC1.54□□□□□ -2.16
SDC3O75056 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.54□□□□□ -2.16
SDC3O75056 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.54□□□□□ -2.16
SDC3O75056 ZNF204P-201ENST00000416749 2397 ntBASIC1.54□□□□□ -2.16
SDC3O75056 Y_RNA.86-201ENST00000363020 111 ntBASIC1.53□□□□□ -2.16
SDC3O75056 RNU6-112P-201ENST00000363599 104 ntBASIC1.53□□□□□ -2.16
SDC3O75056 SNORD48-201ENST00000364953 64 ntBASIC1.53□□□□□ -2.16
SDC3O75056 RNU6-418P-201ENST00000384035 107 ntBASIC1.53□□□□□ -2.16
SDC3O75056 RNU6-17P-201ENST00000384245 107 ntBASIC1.53□□□□□ -2.16
SDC3O75056 Y_RNA.490-201ENST00000384413 102 ntBASIC1.53□□□□□ -2.16
SDC3O75056 Y_RNA.505-201ENST00000384489 102 ntBASIC1.53□□□□□ -2.16
SDC3O75056 RNU6-18P-201ENST00000384527 107 ntBASIC1.53□□□□□ -2.16
SDC3O75056 RNU6-1235P-201ENST00000384559 107 ntBASIC1.53□□□□□ -2.16
SDC3O75056 RNU6-306P-201ENST00000384617 107 ntBASIC1.53□□□□□ -2.16
SDC3O75056 MIR32-201ENST00000384965 70 ntBASIC1.53□□□□□ -2.16
SDC3O75056 MIR549A-201ENST00000385268 96 ntBASIC1.53□□□□□ -2.16
SDC3O75056 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.53□□□□□ -2.16
SDC3O75056 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.53□□□□□ -2.16
SDC3O75056 SNORD5.1-201ENST00000458800 75 ntBASIC1.53□□□□□ -2.16
SDC3O75056 RNU6-498P-201ENST00000459468 107 ntBASIC1.53□□□□□ -2.16
SDC3O75056 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.53□□□□□ -2.16
SDC3O75056 RNU6-358P-201ENST00000516564 75 ntBASIC1.53□□□□□ -2.16
SDC3O75056 RNU6-273P-201ENST00000516937 96 ntBASIC1.53□□□□□ -2.16
SDC3O75056 RNU6-58P-201ENST00000517143 103 ntBASIC1.53□□□□□ -2.16
SDC3O75056 AC027288.2-201ENST00000553028 243 ntBASIC1.53□□□□□ -2.16
SDC3O75056 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.53□□□□□ -2.16
SDC3O75056 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.53□□□□□ -2.16
SDC3O75056 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.53□□□□□ -2.16
SDC3O75056 Y_RNA.72-201ENST00000362894 103 ntBASIC1.52□□□□□ -2.17
SDC3O75056 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.52□□□□□ -2.17
SDC3O75056 AL117342.1-201ENST00000404861 406 ntBASIC1.52□□□□□ -2.17
SDC3O75056 AL356776.1-201ENST00000406574 447 ntBASIC1.52□□□□□ -2.17
SDC3O75056 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.52□□□□□ -2.17
SDC3O75056 AC060773.1-201ENST00000421698 310 ntBASIC1.52□□□□□ -2.17
SDC3O75056 AC099677.2-201ENST00000436385 175 ntBASIC1.52□□□□□ -2.17
SDC3O75056 AC074290.1-201ENST00000448883 135 ntBASIC1.52□□□□□ -2.17
SDC3O75056 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.52□□□□□ -2.17
SDC3O75056 RPL30P10-201ENST00000488148 337 ntBASIC1.52□□□□□ -2.17
SDC3O75056 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.52□□□□□ -2.17
SDC3O75056 AC069439.1-201ENST00000494739 167 ntBASIC1.52□□□□□ -2.17
SDC3O75056 MTND5P5-201ENST00000503764 376 ntBASIC1.52□□□□□ -2.17
SDC3O75056 RNU1-54P-201ENST00000517181 120 ntBASIC1.52□□□□□ -2.17
SDC3O75056 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC1.52□□□□□ -2.17
SDC3O75056 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.52□□□□□ -2.17
SDC3O75056 MIR4742-201ENST00000581069 85 ntBASIC1.52□□□□□ -2.17
SDC3O75056 RNU1-62P-201ENST00000362599 164 ntBASIC1.51□□□□□ -2.17
SDC3O75056 RNU6-414P-201ENST00000363705 104 ntBASIC1.51□□□□□ -2.17
SDC3O75056 Y_RNA.319-201ENST00000365138 92 ntBASIC1.51□□□□□ -2.17
SDC3O75056 Y_RNA.327-201ENST00000365201 102 ntBASIC1.51□□□□□ -2.17
SDC3O75056 RNU6-296P-201ENST00000384608 107 ntBASIC1.51□□□□□ -2.17
SDC3O75056 RNU2-7P-201ENST00000410794 178 ntBASIC1.51□□□□□ -2.17
SDC3O75056 MTND3P8-201ENST00000412909 339 ntBASIC1.51□□□□□ -2.17
SDC3O75056 USP9YP30-201ENST00000430729 455 ntBASIC1.51□□□□□ -2.17
SDC3O75056 AC005908.1-201ENST00000468701 347 ntBASIC1.51□□□□□ -2.17
SDC3O75056 FO393415.2-201ENST00000480085 343 ntBASIC1.51□□□□□ -2.17
SDC3O75056 AC025465.3-201ENST00000510570 311 ntBASIC1.51□□□□□ -2.17
SDC3O75056 MIR4790-201ENST00000577799 79 ntBASIC1.51□□□□□ -2.17
SDC3O75056 MIR4273-201ENST00000582824 84 ntBASIC1.51□□□□□ -2.17
SDC3O75056 7SK.7-201ENST00000603504 247 ntBASIC1.51□□□□□ -2.17
SDC3O75056 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.51□□□□□ -2.17
SDC3O75056 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.51□□□□□ -2.17
SDC3O75056 ZNF299P-201ENST00000406845 1804 ntBASIC1.51□□□□□ -2.17
SDC3O75056 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.51□□□□□ -2.17
SDC3O75056 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
SDC3O75056 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.5□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 168 ms