Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.24□□□□□ -2.05
NPHP1O15259 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.24□□□□□ -2.05
NPHP1O15259 AL353149.1-201ENST00000610667 244 ntBASIC2.24□□□□□ -2.05
NPHP1O15259 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.24□□□□□ -2.05
NPHP1O15259 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.24□□□□□ -2.05
NPHP1O15259 RNU6-862P-201ENST00000362804 105 ntBASIC2.23□□□□□ -2.05
NPHP1O15259 RNU6-1305P-201ENST00000364353 104 ntBASIC2.23□□□□□ -2.05
NPHP1O15259 Y_RNA.269-201ENST00000364685 89 ntBASIC2.23□□□□□ -2.05
NPHP1O15259 AL117342.1-201ENST00000404861 406 ntBASIC2.23□□□□□ -2.05
NPHP1O15259 RNA5SP504-201ENST00000410676 117 ntBASIC2.23□□□□□ -2.05
NPHP1O15259 RN7SL274P-201ENST00000492268 272 ntBASIC2.23□□□□□ -2.05
NPHP1O15259 HMGB3P17-201ENST00000504195 649 ntBASIC2.23□□□□□ -2.05
NPHP1O15259 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
NPHP1O15259 AC011406.1-201ENST00000512440 370 ntBASIC2.23□□□□□ -2.05
NPHP1O15259 RNU6-1041P-201ENST00000516254 102 ntBASIC2.23□□□□□ -2.05
NPHP1O15259 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.23□□□□□ -2.05
NPHP1O15259 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC2.23□□□□□ -2.05
NPHP1O15259 7SK.7-201ENST00000603504 247 ntBASIC2.23□□□□□ -2.05
NPHP1O15259 RNU6-595P-201ENST00000363944 107 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 SNORA67.5-201ENST00000391036 107 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 AC092473.1-201ENST00000441098 221 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.22□□□□□ -2.05
NPHP1O15259 AC005840.1-201ENST00000498412 377 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 SNORA25.14-201ENST00000516481 132 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 AL590705.4-201ENST00000532209 134 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 MIR4303-201ENST00000581299 66 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 AC011712.1-201ENST00000588959 234 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.22□□□□□ -2.05
NPHP1O15259 AC069114.2-201ENST00000604699 304 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 AC018462.2-201ENST00000605375 395 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 AL359821.1-201ENST00000605519 182 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 SNORD11B-201ENST00000607707 90 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.22□□□□□ -2.05
NPHP1O15259 AC245060.5-201ENST00000610778 3293 ntBASIC2.22□□□□□ -2.05
NPHP1O15259 RNY1P10-201ENST00000363268 113 ntBASIC2.21□□□□□ -2.06
NPHP1O15259 RNU6-873P-201ENST00000363833 107 ntBASIC2.21□□□□□ -2.06
NPHP1O15259 SNORA16.1-201ENST00000364597 132 ntBASIC2.21□□□□□ -2.06
NPHP1O15259 Y_RNA.490-201ENST00000384413 102 ntBASIC2.21□□□□□ -2.06
NPHP1O15259 RNU6-296P-201ENST00000384608 107 ntBASIC2.21□□□□□ -2.06
NPHP1O15259 AP1B1P2-201ENST00000416196 106 ntBASIC2.21□□□□□ -2.06
NPHP1O15259 RPL21P111-201ENST00000418453 477 ntBASIC2.21□□□□□ -2.06
NPHP1O15259 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.21□□□□□ -2.06
NPHP1O15259 RNA5SP384-201ENST00000516615 116 ntBASIC2.21□□□□□ -2.06
NPHP1O15259 RNU6-1016P-201ENST00000516689 94 ntBASIC2.21□□□□□ -2.06
NPHP1O15259 RNU1-117P-201ENST00000517041 158 ntBASIC2.21□□□□□ -2.06
NPHP1O15259 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.21□□□□□ -2.06
NPHP1O15259 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.21□□□□□ -2.06
NPHP1O15259 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.2□□□□□ -2.06
NPHP1O15259 Y_RNA.248-201ENST00000364501 109 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 RNU6-541P-201ENST00000384709 110 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 RNU6-159P-201ENST00000391080 106 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 MIR548F5-201ENST00000408421 86 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.2□□□□□ -2.06
NPHP1O15259 MTCO3P29-201ENST00000432119 779 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 AL445305.1-201ENST00000432577 575 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 AC245047.4-201ENST00000433189 144 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 RPS3AP52-201ENST00000435639 297 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 AC074290.1-201ENST00000448883 135 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.2□□□□□ -2.06
NPHP1O15259 RNU7-57P-201ENST00000459540 60 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 AC026782.1-201ENST00000512952 449 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 RNU7-175P-201ENST00000515915 61 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 UBL5P4-201ENST00000562584 236 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 SUB1P3-201ENST00000564581 315 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 AC104581.2-201ENST00000572227 430 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 AL512598.1-201ENST00000610158 273 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 AL078596.1-201ENST00000624856 447 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 MTND4P12-201ENST00000498999 1377 ntBASIC2.2□□□□□ -2.06
NPHP1O15259 RNU1-62P-201ENST00000362599 164 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 RNU1-96P-201ENST00000364163 162 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 RNU6-593P-201ENST00000364716 112 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 Y_RNA.405-201ENST00000383979 100 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 Y_RNA.451-201ENST00000384200 100 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 Y_RNA.524-201ENST00000384564 100 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 Y_RNA.561-201ENST00000384694 100 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 SUMO2P12-201ENST00000405924 140 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 HSPE1P21-201ENST00000438283 308 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 AC134698.4-201ENST00000523451 826 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 CBX3P8-201ENST00000532412 525 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.19□□□□□ -2.06
NPHP1O15259 AC126177.8-201ENST00000618339 1015 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 MIR7111-201ENST00000619751 72 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 MIR338-201ENST00000636369 67 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 AC068205.3-201ENST00000636385 468 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 CASC19-280ENST00000642102 1351 ntBASIC2.19□□□□□ -2.06
NPHP1O15259 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
NPHP1O15259 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.18□□□□□ -2.06
NPHP1O15259 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.18□□□□□ -2.06
NPHP1O15259 Y_RNA.48-201ENST00000362710 103 ntBASIC2.18□□□□□ -2.06
NPHP1O15259 Y_RNA.118-201ENST00000363300 101 ntBASIC2.18□□□□□ -2.06
NPHP1O15259 Y_RNA.339-201ENST00000365325 102 ntBASIC2.18□□□□□ -2.06
NPHP1O15259 Y_RNA.473-201ENST00000384333 102 ntBASIC2.18□□□□□ -2.06
NPHP1O15259 AC074085.1-201ENST00000413598 418 ntBASIC2.18□□□□□ -2.06
NPHP1O15259 AP000870.1-201ENST00000472927 406 ntBASIC2.18□□□□□ -2.06
NPHP1O15259 AC046134.1-201ENST00000514454 666 ntBASIC2.18□□□□□ -2.06
NPHP1O15259 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC2.18□□□□□ -2.06
NPHP1O15259 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.18□□□□□ -2.06
NPHP1O15259 SNORA25.9-201ENST00000365087 128 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 163.7 ms