Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 RNU6-227P-201ENST00000362865 103 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 RNU6-282P-201ENST00000365357 103 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 RNU6-606P-201ENST00000384721 111 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 SNORD73A-201ENST00000386062 65 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 RNA5SP494-201ENST00000410653 129 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 AC004866.1-201ENST00000411748 78 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 AC002429.1-201ENST00000437672 148 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 SNORD42A-201ENST00000459584 64 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 MTND1P22-201ENST00000510572 951 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 RNU6-197P-201ENST00000516680 100 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 AC025423.5-201ENST00000550230 219 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 AL513534.2-201ENST00000603836 250 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 AC022217.4-201ENST00000604389 163 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 AC068792.1-201ENST00000621354 417 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 SNORD3E-202ENST00000627253 216 ntBASIC0.68□□□□□ -2.3
USH1CQ9Y6N9 Y_RNA.112-201ENST00000363250 102 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 Y_RNA.124-201ENST00000363339 93 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 RNU6-553P-201ENST00000364047 96 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 RNU6-505P-201ENST00000384427 107 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 RNU2-9P-201ENST00000410194 145 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 BX295541.1-201ENST00000417774 250 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AC004941.2-201ENST00000427009 228 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 RPS29P27-201ENST00000463711 170 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AC105758.1-201ENST00000506038 399 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AC010493.1-201ENST00000513479 292 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 RNU6-322P-201ENST00000516010 103 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 SNORA18.6-201ENST00000516792 115 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AC090142.3-201ENST00000519012 385 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AC136628.3-201ENST00000521868 290 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AP002963.1-201ENST00000530590 184 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AL137161.1-201ENST00000532231 390 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AC068790.6-201ENST00000602558 258 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AC027449.1-201ENST00000608890 407 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AL359075.3-201ENST00000613288 217 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 MIR8054-201ENST00000620877 86 ntBASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.67□□□□□ -2.3
USH1CQ9Y6N9 AC018630.2-201ENST00000534866 2403 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 RNU5B-2P-201ENST00000363036 113 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 MIR608-201ENST00000384820 100 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 MIR598-201ENST00000384868 97 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 MIR586-201ENST00000385035 97 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 SNORD12-201ENST00000391002 90 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 RNU6-1054P-201ENST00000411293 104 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 RPS26P42-201ENST00000413485 326 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 AC016909.1-201ENST00000415916 166 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 MTND3P9-201ENST00000429526 346 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 AC005002.2-201ENST00000438228 269 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 RNU6-1037P-201ENST00000459571 107 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 AC117454.1-201ENST00000491120 168 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 AC234772.3-201ENST00000602277 528 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 AL390123.1-201ENST00000603216 237 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 GHRLOS.1-201ENST00000610995 70 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 AC087683.2-201ENST00000611384 326 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 AC009161.2-201ENST00000624626 138 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 U6.108-201ENST00000637764 58 ntBASIC0.66□□□□□ -2.3
USH1CQ9Y6N9 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 RNU6-17P-201ENST00000384245 107 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 RNU6-18P-201ENST00000384527 107 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 RNU6-440P-201ENST00000390882 105 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 AC133104.1-201ENST00000429100 218 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 AC245047.3-201ENST00000429428 127 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 CETN4P-201ENST00000432407 469 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 AC245047.7-201ENST00000440265 293 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 RNU7-125P-201ENST00000458760 62 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 RNU7-138P-201ENST00000459479 64 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 SRRM1P2-201ENST00000464531 1192 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 SNORD79.1-201ENST00000516069 84 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 RNU6-947P-201ENST00000516264 106 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 RNU6-759P-201ENST00000516740 103 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 RNU6-232P-201ENST00000517144 64 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 AL590705.4-201ENST00000532209 134 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 AL121579.1-201ENST00000555129 305 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 MIR5583-1-201ENST00000580941 59 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 AC068790.2-201ENST00000602601 557 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 AL050303.3-201ENST00000613704 284 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 uc_338.17-201ENST00000619633 179 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 AL078596.1-201ENST00000624856 447 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 snoZ196.1-201ENST00000625269 89 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 MTND4P5-201ENST00000435821 1374 ntBASIC0.65□□□□□ -2.31
USH1CQ9Y6N9 RNU6-181P-201ENST00000363225 107 ntBASIC0.64□□□□□ -2.31
USH1CQ9Y6N9 RNU4-76P-201ENST00000364509 141 ntBASIC0.64□□□□□ -2.31
USH1CQ9Y6N9 Y_RNA.466-201ENST00000384294 113 ntBASIC0.64□□□□□ -2.31
USH1CQ9Y6N9 RNU5A-2P-201ENST00000384337 116 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 420.6 ms