Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AP001596.2-201ENST00000608410 312 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 AC006001.4-201ENST00000622243 395 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 AF246928.1-201ENST00000623768 87 ntBASIC0.74□□□□□ -2.29
USP42Q9H9J4 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 RNU6-181P-201ENST00000363225 107 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.73□□□□□ -2.29
USP42Q9H9J4 AC004866.1-201ENST00000411748 78 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 PIGFP2-201ENST00000421400 651 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 AL031667.1-201ENST00000440222 725 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.73□□□□□ -2.29
USP42Q9H9J4 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.73□□□□□ -2.29
USP42Q9H9J4 SNORA31.4-201ENST00000516049 129 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 RNU6-948P-201ENST00000516374 107 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 SNORA18.6-201ENST00000516792 115 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 RNU6-445P-201ENST00000516949 107 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 AC090142.3-201ENST00000519012 385 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.73□□□□□ -2.29
USP42Q9H9J4 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.73□□□□□ -2.29
USP42Q9H9J4 AC025423.5-201ENST00000550230 219 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC0.73□□□□□ -2.29
USP42Q9H9J4 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.73□□□□□ -2.29
USP42Q9H9J4 MIR3915-201ENST00000578518 97 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 RNU6-85P-201ENST00000605989 107 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 AC024933.1-201ENST00000608472 348 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 AC106800.4-201ENST00000614905 153 ntBASIC0.73□□□□□ -2.29
USP42Q9H9J4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.73□□□□□ -2.29
USP42Q9H9J4 SRP54-214ENST00000630962 162 ntTSL 5 BASIC0.73□□□□□ -2.29
USP42Q9H9J4 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.72□□□□□ -2.29
USP42Q9H9J4 RNU6-562P-201ENST00000362731 107 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 snoU2-30.2-201ENST00000362805 70 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 RNU6-716P-201ENST00000365621 103 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 RNU6-456P-201ENST00000384493 107 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 MIR549A-201ENST00000385268 96 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 SNORD73A-201ENST00000386062 65 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 RNU6-903P-201ENST00000391270 109 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 RNU2-9P-201ENST00000410194 145 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 RNU2-64P-201ENST00000411315 191 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC0.72□□□□□ -2.29
USP42Q9H9J4 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC0.72□□□□□ -2.29
USP42Q9H9J4 MTND2P18-201ENST00000419962 1030 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 CETN4P-201ENST00000432407 469 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.72□□□□□ -2.29
USP42Q9H9J4 RNU7-167P-201ENST00000459160 62 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 RPS29P27-201ENST00000463711 170 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC0.72□□□□□ -2.29
USP42Q9H9J4 LINC02462-201ENST00000503009 430 ntTSL 5 BASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC010486.2-201ENST00000505572 483 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 PDCD5P2-201ENST00000507570 312 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC079140.5-201ENST00000507882 310 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.72□□□□□ -2.29
USP42Q9H9J4 RNU6-947P-201ENST00000516264 106 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 RNU6-1146P-201ENST00000516282 102 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 RNA5SP121-201ENST00000516537 101 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 TPRKBP2-201ENST00000565969 475 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 MIR3908-201ENST00000579798 126 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.72□□□□□ -2.29
USP42Q9H9J4 Z99497.2-201ENST00000603634 310 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC245014.2-201ENST00000603689 287 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC025449.1-201ENST00000603896 529 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC246785.4-201ENST00000605374 287 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC021506.2-201ENST00000612354 169 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC122133.1-201ENST00000613964 233 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 uc_338.11-201ENST00000619132 160 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC009509.4-201ENST00000619202 509 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC106754.2-201ENST00000623006 233 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 AC007494.3-201ENST00000624660 743 ntBASIC0.72□□□□□ -2.29
USP42Q9H9J4 RNU6-534P-201ENST00000364877 106 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 SNORD114-24-201ENST00000365029 72 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 RNU6-606P-201ENST00000384721 111 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 RNA5SP467-201ENST00000391274 118 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 AC063976.4-201ENST00000421971 163 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.71□□□□□ -2.3
USP42Q9H9J4 ZNF736P8Y-201ENST00000451913 669 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 RPL39P38-201ENST00000467018 153 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 GMFBP1-201ENST00000467831 427 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 AC048334.1-201ENST00000477975 159 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.71□□□□□ -2.3
USP42Q9H9J4 RNU6-415P-201ENST00000516252 97 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 RNU6-229P-201ENST00000516614 102 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 RNU6-922P-201ENST00000516753 99 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.71□□□□□ -2.3
USP42Q9H9J4 AP003484.1-201ENST00000530974 250 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 AC004817.2-201ENST00000561794 651 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 MIR5006-201ENST00000583027 110 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 MIR4653-201ENST00000585107 83 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 AL136221.1-201ENST00000621449 509 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 AC068787.1-201ENST00000623908 691 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 AC009161.2-201ENST00000624626 138 ntBASIC0.71□□□□□ -2.3
USP42Q9H9J4 RNA5SP257-201ENST00000363023 116 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 RNU6-950P-201ENST00000384651 107 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.7□□□□□ -2.3
USP42Q9H9J4 AC133104.1-201ENST00000429100 218 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.7□□□□□ -2.3
USP42Q9H9J4 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.7□□□□□ -2.3
USP42Q9H9J4 AL606517.2-201ENST00000442855 241 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 AC105417.1-201ENST00000514691 285 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 Y_RNA.681-201ENST00000516445 113 ntBASIC0.7□□□□□ -2.3
USP42Q9H9J4 RNU2-34P-201ENST00000516534 121 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 116.7 ms