Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 AC096772.1-201ENST00000609146 564 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 MIR1244-1-201ENST00000612829 85 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC133104.2-201ENST00000615272 193 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC007485.1-201ENST00000616755 206 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC087588.2-201ENST00000617667 426 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC007742.2-201ENST00000618226 398 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC138305.3-201ENST00000624988 240 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 SCARNA4-201ENST00000629045 128 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 MIR1244-3-201ENST00000635744 85 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 MIR1244-2-201ENST00000636449 85 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 MIR1244-4-202ENST00000636813 85 ntBASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.05□□□□□ -2.08
UPF3AQ9H1J1 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 AL359851.1-201ENST00000569460 4997 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 AC092268.1-201ENST00000342691 405 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.128-201ENST00000363391 112 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.148-201ENST00000363557 117 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.405-201ENST00000383979 100 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.445-201ENST00000384168 102 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.451-201ENST00000384200 100 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 RNY1P14-201ENST00000384426 108 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.524-201ENST00000384564 100 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.561-201ENST00000384694 100 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 MIR218-1-201ENST00000384999 110 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 SNORA12.2-201ENST00000391040 156 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 RNA5SP338-201ENST00000410495 85 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 RNA5SP270-201ENST00000411361 118 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 RPL23AP50-201ENST00000434149 455 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 AC087477.1-201ENST00000465747 340 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 RNU6-976P-201ENST00000516086 111 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 RNU2-53P-201ENST00000516257 147 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 AP003072.1-201ENST00000531740 145 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 AL590705.4-201ENST00000532209 134 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 CYP2C61P-201ENST00000604072 290 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 WWP1P1-201ENST00000466609 2769 ntBASIC2.04□□□□□ -2.08
UPF3AQ9H1J1 SNORA22B-201ENST00000383876 138 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.577-201ENST00000384794 101 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 SNORA67.5-201ENST00000391036 107 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 CBX3P9-201ENST00000402326 552 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 MIR1302-11-201ENST00000408051 138 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 MIR1302-9-201ENST00000408365 138 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 MIR1302-10-201ENST00000408734 138 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 RNA5SP201-201ENST00000410316 124 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 RNU6-321P-201ENST00000410912 106 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 AL035666.1-201ENST00000446195 348 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 U8.22-201ENST00000459141 133 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 AC090515.1-201ENST00000465295 476 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 AL163540.1-201ENST00000485382 386 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 AC023141.11-201ENST00000508864 202 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 Y_RNA.661-201ENST00000516003 99 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 AC016256.1-201ENST00000547971 354 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 MIR3199-1-201ENST00000582434 88 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 AL713866.2-201ENST00000603579 219 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 AL034555.1-201ENST00000604816 211 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 MIR1302-2-201ENST00000607096 138 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 AL355802.3-201ENST00000607571 545 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 MIR8081-201ENST00000611533 95 ntBASIC2.03□□□□□ -2.08
UPF3AQ9H1J1 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 AC010329.5-201ENST00000623497 2174 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 snoU2_19.1-201ENST00000362361 80 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU6-655P-201ENST00000362858 107 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU6-486P-201ENST00000363116 107 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU6-1210P-201ENST00000363775 107 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU4-9P-201ENST00000364951 139 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU6-1032P-201ENST00000384100 107 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU6-17P-201ENST00000384245 107 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU6-18P-201ENST00000384527 107 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 MIR17-201ENST00000385012 84 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 MIR549A-201ENST00000385268 96 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU6-220P-201ENST00000390919 107 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU4-62P-201ENST00000410125 130 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU6-1156P-201ENST00000410365 100 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 AP1B1P2-201ENST00000416196 106 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 MCFD2P1-201ENST00000417812 300 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 AC012306.1-201ENST00000423267 114 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 HMGN2P38-201ENST00000423806 265 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 MTND4P19-201ENST00000446659 478 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 TOMM22P6-201ENST00000465035 409 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNA5SP112-201ENST00000515937 99 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU4-77P-201ENST00000516692 156 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RNU6-307P-201ENST00000516743 106 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 SCARNA3-201ENST00000517097 143 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 RN7SKP295-201ENST00000517264 153 ntBASIC2.02□□□□□ -2.09
UPF3AQ9H1J1 AC115990.1-201ENST00000526957 301 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 116.3 ms