Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AC133104.2-201ENST00000615272 193 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 AL162373.1-201ENST00000620433 407 ntBASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CCDC3Q9BQI4 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 RNU6-280P-201ENST00000364145 104 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.405-201ENST00000383979 100 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.451-201ENST00000384200 100 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.524-201ENST00000384564 100 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 RNU6-310P-201ENST00000384655 107 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.561-201ENST00000384694 100 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 MIR17-201ENST00000385012 84 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 RNA5SP213-201ENST00000391031 106 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 AC004386.2-201ENST00000441858 148 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 AL021397.1-201ENST00000451806 248 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 RNU7-14P-201ENST00000459331 62 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 AC090255.1-201ENST00000495779 349 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 ATP5EP1-201ENST00000510257 156 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 RNU6-507P-201ENST00000516045 100 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 MIR514B-201ENST00000516774 80 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.706-201ENST00000516933 99 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 FRG2DP-202ENST00000566967 323 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 MIR4529-201ENST00000578110 78 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 MIR1302-1-201ENST00000637932 143 ntBASIC1.92□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.140-201ENST00000363474 103 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 RNU6-1164P-201ENST00000364428 107 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.473-201ENST00000384333 102 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 SNORA51.11-201ENST00000384442 131 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.529-201ENST00000384586 119 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 MIR518A2-201ENST00000384966 87 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 RNA5SP465-201ENST00000391195 109 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 MIR190B-201ENST00000401119 79 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.646-201ENST00000410980 101 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 AC007395.1-201ENST00000451333 677 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 MTCO3P8-201ENST00000453691 755 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 Y_RNA.653-201ENST00000459091 95 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 MTND3P22-201ENST00000510932 243 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 AC093303.1-201ENST00000514549 295 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 RNU6-1114P-201ENST00000516022 107 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 MIR449C-201ENST00000516047 92 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 RNU2-34P-201ENST00000516534 121 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 AC008873.1-201ENST00000625051 138 ntBASIC1.91□□□□□ -2.1
CCDC3Q9BQI4 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
CCDC3Q9BQI4 RNU1-17P-201ENST00000363022 152 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.364-201ENST00000365532 101 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 SNORA67.2-201ENST00000384300 149 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 RNU6-331P-201ENST00000384724 107 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.577-201ENST00000384794 101 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 MIR586-201ENST00000385035 97 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 RNY4P36-201ENST00000391116 96 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 MTCO2P27-201ENST00000420740 428 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 HMGN2P38-201ENST00000423806 265 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 MTCO1P44-201ENST00000441935 243 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 NDUFB4P10-201ENST00000452541 359 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 SCARNA16.2-201ENST00000516520 172 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.718-201ENST00000517110 102 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 MIR2355-201ENST00000517199 87 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 AL355375.2-201ENST00000574825 175 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 MIR5002-201ENST00000584713 97 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 AC008749.1-201ENST00000597650 306 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 AL117336.2-201ENST00000602435 335 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 AL355802.3-201ENST00000607571 545 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 CENPCP1-201ENST00000533085 2578 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 ZNF204P-201ENST00000416749 2397 ntBASIC1.9□□□□□ -2.11
CCDC3Q9BQI4 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 MIR340-201ENST00000362125 95 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 Y_RNA.48-201ENST00000362710 103 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 RNA5SP160-201ENST00000364866 120 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 RNU6-438P-201ENST00000365561 103 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 SNORD116-29-201ENST00000384516 83 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 RNU6-160P-201ENST00000384591 107 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 MIR1283-1-201ENST00000408494 87 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 MIR1283-2-201ENST00000408621 87 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 AC004866.1-201ENST00000411748 78 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 AC007098.1-201ENST00000420122 367 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 MTND2P29-201ENST00000438595 412 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 AL357134.1-201ENST00000445848 426 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 SNORD19B-201ENST00000459623 84 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 RPL23AP63-201ENST00000498752 471 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 AC067942.3-201ENST00000512025 362 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 CYCSP23-201ENST00000519781 313 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 ANP32BP3-201ENST00000559213 706 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 MIR5006-201ENST00000583027 110 ntBASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC3Q9BQI4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.89□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms