Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.02□□□□□ -2.09
USP28Q96RU2 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.02□□□□□ -2.09
USP28Q96RU2 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.02□□□□□ -2.09
USP28Q96RU2 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.02□□□□□ -2.09
USP28Q96RU2 snoU13.30-201ENST00000458951 104 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC2.02□□□□□ -2.09
USP28Q96RU2 Y_RNA.661-201ENST00000516003 99 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 MIR449C-201ENST00000516047 92 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 SUB1P3-201ENST00000564581 315 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 AL031274.2-201ENST00000599419 203 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 SNRPGP17-201ENST00000603780 214 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 AC005034.5-201ENST00000604219 466 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 AC087588.2-201ENST00000617667 426 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
USP28Q96RU2 RNU6-490P-201ENST00000362985 107 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 U8.2-201ENST00000363156 134 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 RNU1-23P-201ENST00000363361 144 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 AC018865.2-201ENST00000423631 129 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.01□□□□□ -2.09
USP28Q96RU2 RNU7-169P-201ENST00000459456 61 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.01□□□□□ -2.09
USP28Q96RU2 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.01□□□□□ -2.09
USP28Q96RU2 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.01□□□□□ -2.09
USP28Q96RU2 RNU6-307P-201ENST00000516743 106 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 SNORA48.11-201ENST00000517015 89 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 RNU6-264P-201ENST00000517134 104 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 DEFB131C-201ENST00000528817 165 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 AC016256.1-201ENST00000547971 354 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 AC027288.2-201ENST00000553028 243 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 UBL5P4-201ENST00000562584 236 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 CYP4A27P-201ENST00000567218 190 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 AC104581.2-201ENST00000572227 430 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 MIR3171-201ENST00000584270 74 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 AL096840.1-201ENST00000603287 93 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 AC016727.2-201ENST00000603988 621 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 AC012493.3-201ENST00000604494 112 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 AL670379.2-201ENST00000604983 252 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 PCGEM1.1-201ENST00000613431 131 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 AC008121.3-201ENST00000618726 433 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 AC091925.1-201ENST00000623204 462 ntBASIC2.01□□□□□ -2.09
USP28Q96RU2 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.01□□□□□ -2.09
USP28Q96RU2 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2□□□□□ -2.09
USP28Q96RU2 Y_RNA.80-201ENST00000362996 102 ntBASIC2□□□□□ -2.09
USP28Q96RU2 Y_RNA.106-201ENST00000363189 100 ntBASIC2□□□□□ -2.09
USP28Q96RU2 Y_RNA.148-201ENST00000363557 117 ntBASIC2□□□□□ -2.09
USP28Q96RU2 RNU6-17P-201ENST00000384245 107 ntBASIC2□□□□□ -2.09
USP28Q96RU2 Y_RNA.485-201ENST00000384395 102 ntBASIC2□□□□□ -2.09
USP28Q96RU2 RNY1P14-201ENST00000384426 108 ntBASIC2□□□□□ -2.09
USP28Q96RU2 RNU6-18P-201ENST00000384527 107 ntBASIC2□□□□□ -2.09
USP28Q96RU2 RNU6-1093P-201ENST00000391194 107 ntBASIC2□□□□□ -2.09
USP28Q96RU2 HMGN2P39-201ENST00000398005 273 ntBASIC2□□□□□ -2.09
USP28Q96RU2 MTCYBP2-201ENST00000407745 171 ntBASIC2□□□□□ -2.09
USP28Q96RU2 MIR548P-201ENST00000408336 84 ntBASIC2□□□□□ -2.09
USP28Q96RU2 Y_RNA.597-201ENST00000410463 100 ntBASIC2□□□□□ -2.09
USP28Q96RU2 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2□□□□□ -2.09
USP28Q96RU2 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2□□□□□ -2.09
USP28Q96RU2 AL160004.2-201ENST00000432935 350 ntBASIC2□□□□□ -2.09
USP28Q96RU2 AL353689.1-201ENST00000438895 199 ntBASIC2□□□□□ -2.09
USP28Q96RU2 OR2AQ1P-201ENST00000451972 200 ntBASIC2□□□□□ -2.09
USP28Q96RU2 RN7SKP210-201ENST00000459176 261 ntBASIC2□□□□□ -2.09
USP28Q96RU2 Y_RNA.631-201ENST00000459607 101 ntBASIC2□□□□□ -2.09
USP28Q96RU2 AP000870.1-201ENST00000472927 406 ntBASIC2□□□□□ -2.09
USP28Q96RU2 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC2□□□□□ -2.09
USP28Q96RU2 MRPS17P9-201ENST00000511924 393 ntBASIC2□□□□□ -2.09
USP28Q96RU2 SNORA4.4-201ENST00000515921 135 ntBASIC2□□□□□ -2.09
USP28Q96RU2 RNU6-586P-201ENST00000517265 104 ntBASIC2□□□□□ -2.09
USP28Q96RU2 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2□□□□□ -2.09
USP28Q96RU2 AC024614.2-201ENST00000577584 372 ntBASIC2□□□□□ -2.09
USP28Q96RU2 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2□□□□□ -2.09
USP28Q96RU2 AL109918.3-201ENST00000603072 338 ntBASIC2□□□□□ -2.09
USP28Q96RU2 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC2□□□□□ -2.09
USP28Q96RU2 AC134503.1-201ENST00000633048 54 ntBASIC2□□□□□ -2.09
USP28Q96RU2 AC099654.10-201ENST00000640395 161 ntBASIC2□□□□□ -2.09
USP28Q96RU2 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC2□□□□□ -2.09
USP28Q96RU2 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.99□□□□□ -2.09
USP28Q96RU2 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
USP28Q96RU2 Y_RNA.112-201ENST00000363250 102 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 SNORD115-32-201ENST00000364079 82 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 Y_RNA.252-201ENST00000364556 101 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 Y_RNA.314-201ENST00000365114 102 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 SNORA22B-201ENST00000383876 138 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 RNU6-1227P-201ENST00000383981 107 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 Y_RNA.577-201ENST00000384794 101 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 MIR561-201ENST00000385216 97 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 RNU6-700P-201ENST00000391043 107 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 MIR190B-201ENST00000401119 79 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 AC019129.1-201ENST00000403786 261 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 MTCYBP10-201ENST00000424905 650 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.99□□□□□ -2.09
USP28Q96RU2 RNU7-87P-201ENST00000459343 62 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 RNU7-175P-201ENST00000515915 61 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 RNU6-976P-201ENST00000516086 111 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 RNU1-41P-201ENST00000516161 162 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 RNU1-48P-201ENST00000516400 162 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 AP003072.1-201ENST00000531740 145 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 MIR3923-201ENST00000579521 83 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.99□□□□□ -2.09
USP28Q96RU2 AC005296.1-201ENST00000616145 209 ntBASIC1.99□□□□□ -2.09
USP28Q96RU2 AC138305.3-201ENST00000624988 240 ntBASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms