Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC119751.4-201ENST00000507498 357 ntBASIC-1.16□□□□□ -2.6
LINC00643Q86TS7 RNU2-60P-201ENST00000517290 128 ntBASIC-1.16□□□□□ -2.6
LINC00643Q86TS7 AC023050.3-201ENST00000541142 333 ntBASIC-1.16□□□□□ -2.6
LINC00643Q86TS7 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC-1.16□□□□□ -2.6
LINC00643Q86TS7 MIR1273G-201ENST00000577677 100 ntBASIC-1.16□□□□□ -2.6
LINC00643Q86TS7 MIR3146-201ENST00000580367 79 ntBASIC-1.16□□□□□ -2.6
LINC00643Q86TS7 AC103706.2-201ENST00000638080 240 ntBASIC-1.16□□□□□ -2.6
LINC00643Q86TS7 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 SNORA26-201ENST00000391286 122 ntBASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 RNU6-1245P-201ENST00000411130 106 ntBASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 MTND4P24-201ENST00000424002 397 ntBASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 SNRPGP9-201ENST00000456025 225 ntBASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 RNU7-94P-201ENST00000459576 63 ntBASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 MIR7107-201ENST00000611489 80 ntBASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 AC005332.6-201ENST00000613178 446 ntBASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 AC008250.2-201ENST00000615261 205 ntBASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 U6.42-201ENST00000618440 107 ntBASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 AC026585.1-201ENST00000619582 524 ntBASIC-1.17□□□□□ -2.6
LINC00643Q86TS7 SNORA25.7-201ENST00000364375 127 ntBASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 RNU6-1141P-201ENST00000364520 107 ntBASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 Y_RNA.265-201ENST00000364677 108 ntBASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 RNU6-934P-201ENST00000365154 107 ntBASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 RNU6-549P-201ENST00000384433 107 ntBASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 MIR520C-201ENST00000385005 87 ntBASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 AL049545.1-201ENST00000401856 572 ntBASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 SNORD75.1-201ENST00000408373 60 ntBASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 RPS24P1-201ENST00000438550 371 ntBASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 AL158042.1-201ENST00000605338 460 ntBASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 MIR6515-201ENST00000619843 57 ntBASIC-1.18□□□□□ -2.6
LINC00643Q86TS7 RNU6-562P-201ENST00000362731 107 ntBASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 AC092809.3-201ENST00000415453 231 ntBASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 AC015818.7-201ENST00000428754 109 ntBASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 AC087499.7-201ENST00000441958 109 ntBASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 RNU6-63P-201ENST00000516690 95 ntBASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 RNU6-897P-201ENST00000517135 105 ntBASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 RNU7-128P-201ENST00000517247 62 ntBASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 NARSP2-202ENST00000522022 349 ntTSL 3 BASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 MIR4771-2-201ENST00000577758 74 ntBASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 AC090897.1-201ENST00000580909 226 ntBASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 MIR4771-1-201ENST00000582617 74 ntBASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 MIR1264-201ENST00000616374 69 ntBASIC-1.19□□□□□ -2.6
LINC00643Q86TS7 RNA5SP432-201ENST00000362480 116 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 SNORD115-24-201ENST00000363528 82 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 SNORD114-11-201ENST00000363738 75 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 Y_RNA.258-201ENST00000364613 105 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 RNU6-923P-201ENST00000364753 107 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 RNU6-384P-201ENST00000364900 104 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 RNU6-43P-201ENST00000384302 107 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 RNY1P4-201ENST00000384595 115 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 MTND3P20-201ENST00000407663 186 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 MIR1185-2-201ENST00000408687 86 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 MIR1302-7-201ENST00000408841 72 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 RNU6-1186P-201ENST00000410429 97 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 RNU6-583P-201ENST00000516012 92 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 MIR4676-201ENST00000583078 72 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 AC090186.1-201ENST00000605991 572 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 AC104260.1-201ENST00000616660 539 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 AC027514.1-201ENST00000588561 1603 ntBASIC-1.2□□□□□ -2.6
LINC00643Q86TS7 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 SNORA72.1-201ENST00000363485 129 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 Y_RNA.540-201ENST00000384638 111 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 AL136310.1-201ENST00000404926 654 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 RNU2-3P-201ENST00000410144 191 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 RNA5SP451-201ENST00000410588 110 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 AC010975.2-201ENST00000427781 588 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 AL603825.1-201ENST00000438481 80 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 USP9YP29-201ENST00000445112 563 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 RPS29P27-201ENST00000463711 170 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 AC023632.1-201ENST00000518463 375 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 SLC2A13P1-201ENST00000531560 322 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 MDM2-233ENST00000545204 398 ntTSL 5 BASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 ZNF971P-201ENST00000562068 1249 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 MIR4769-201ENST00000584126 77 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 VN1R87P-201ENST00000596706 487 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 Z99289.3-201ENST00000605586 594 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 AC009994.1-201ENST00000606889 253 ntBASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC-1.21□□□□□ -2.6
LINC00643Q86TS7 RNU5E-7P-201ENST00000365290 117 ntBASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 RNA5SP117-201ENST00000365294 118 ntBASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 Y_RNA.376-201ENST00000365638 108 ntBASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 AC133104.1-201ENST00000429100 218 ntBASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 TRBVB-201ENST00000477100 408 ntBASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 AC079395.1-201ENST00000510981 262 ntBASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 MTCO3P27-201ENST00000514397 196 ntBASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 RNU6-1232P-201ENST00000516299 86 ntBASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 AC026371.1-201ENST00000551867 419 ntBASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 FAM157A-202ENST00000615155 405 ntBASIC-1.22□□□□□ -2.6
LINC00643Q86TS7 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC-1.22□□□□□ -2.6
Retrieved 100 of 98,524 protein–RNA pairs in 97.1 ms