Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 AL160236.1-201ENST00000556317 195 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 AC068338.1-201ENST00000565567 176 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 AL162413.1-201ENST00000603198 110 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 PRR13P7-201ENST00000605538 430 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 SCARNA4-201ENST00000629045 128 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 AC095038.3-201ENST00000634439 195 ntBASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.22□□□□□ -2.21
TRIM40Q6P9F5 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 AL391987.6-201ENST00000305671 199 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 snoU2-30.2-201ENST00000362805 70 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 RNU6-254P-201ENST00000363377 107 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 SNORD116-2-201ENST00000384274 95 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 SNORD116-6-201ENST00000384711 96 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 RNU6-780P-201ENST00000391030 104 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 RPL30P13-201ENST00000418873 348 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 NDUFA5P4-201ENST00000436704 385 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 RNU7-187P-201ENST00000458985 68 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 RPL23AP75-201ENST00000491601 451 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 RNU6-1281P-201ENST00000516223 105 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 AC016957.1-201ENST00000534895 309 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 MDM2-232ENST00000544561 213 ntTSL 5 BASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 MIR3660-201ENST00000584845 100 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 AC010525.2-201ENST00000590920 195 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 DISC2.1-201ENST00000612827 205 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 AL157834.3-201ENST00000615543 103 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 MIR8063-201ENST00000621930 81 ntBASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
TRIM40Q6P9F5 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 SNORD1A-201ENST00000364968 72 ntBASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 SNORA72.2-201ENST00000365028 127 ntBASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 MIR320B2-201ENST00000408479 138 ntBASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 AL161935.2-201ENST00000414627 60 ntBASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 AC092473.1-201ENST00000441098 221 ntBASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 AC074290.1-201ENST00000448883 135 ntBASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 snoU13.27-201ENST00000459278 104 ntBASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 RNU6-1053P-201ENST00000515930 101 ntBASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 Y_RNA.665-201ENST00000516177 98 ntBASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 RNU6-902P-201ENST00000517212 91 ntBASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 AL353770.2-201ENST00000620024 78 ntBASIC1.2□□□□□ -2.22
TRIM40Q6P9F5 AC091812.1-201ENST00000432235 1948 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 MIR26B-201ENST00000362251 77 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 RNU6-1305P-201ENST00000364353 104 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 Y_RNA.372-201ENST00000365599 102 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 RNU6-483P-201ENST00000384088 108 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 MIR487A-201ENST00000385009 80 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 RNU6-908P-201ENST00000410160 94 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 HMGN2P34-201ENST00000437647 269 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 RNU6-1146P-201ENST00000516282 102 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 Y_RNA.704-201ENST00000516851 102 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 AL359821.1-201ENST00000605519 182 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 AC092954.2-201ENST00000609103 430 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 AC008873.1-201ENST00000625051 138 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 ZNF204P-201ENST00000416749 2397 ntBASIC1.19□□□□□ -2.22
TRIM40Q6P9F5 SNORD50.1-201ENST00000362987 71 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 Y_RNA.373-201ENST00000365600 103 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 SNORA67.2-201ENST00000384300 149 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 RNU6-790P-201ENST00000384479 105 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 MIR515-2-201ENST00000384883 83 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 MIR515-1-201ENST00000384884 83 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 RPS27P16-201ENST00000425758 201 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 AC027119.1-201ENST00000440877 241 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 AL353572.1-201ENST00000442490 417 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 AC073910.1-201ENST00000445047 438 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 MTND1P1-201ENST00000445453 368 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 AC079354.2-201ENST00000453523 154 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 RNU7-57P-201ENST00000459540 60 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 AC099513.1-201ENST00000490423 301 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 TRBVA-201ENST00000498804 316 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 AC079140.2-201ENST00000506193 142 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 RN7SKP179-201ENST00000516126 217 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 RNU6-344P-201ENST00000516635 111 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 AC015688.6-201ENST00000577737 104 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 AC006001.4-201ENST00000622243 395 ntBASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.18□□□□□ -2.22
TRIM40Q6P9F5 SNORD33-201ENST00000362761 85 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 SNORA33-201ENST00000363664 130 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 RNU6-534P-201ENST00000364877 106 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 Y_RNA.327-201ENST00000365201 102 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 SNORD26-201ENST00000384147 75 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 MIR194-1-201ENST00000384892 85 ntBASIC1.17□□□□□ -2.22
TRIM40Q6P9F5 Y_RNA.615-201ENST00000410769 117 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 152.7 ms