Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 Y_RNA.99-201ENST00000363138 105 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 Y_RNA.106-201ENST00000363189 100 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 SNORD31B-201ENST00000364977 69 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 SNORA25.9-201ENST00000365087 128 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 Y_RNA.332-201ENST00000365271 113 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 MIR10B-201ENST00000385011 110 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 USP9YP16-201ENST00000430287 407 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 AL137159.1-201ENST00000452808 512 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 MTCO3P8-201ENST00000453691 755 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 USP9YP23-201ENST00000455085 407 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 AC016925.1-201ENST00000458303 298 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 ATP5EP1-201ENST00000510257 156 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 RNU7-4P-201ENST00000516961 62 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 RNA5SP490-201ENST00000517141 136 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 MIR2355-201ENST00000517199 87 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 IGLV3-17-201ENST00000519099 244 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 SNORD14A-201ENST00000606526 91 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 AC245884.12-201ENST00000615364 59 ntBASIC2.23□□□□□ -2.05
COL28A1Q2UY09 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.23□□□□□ -2.05
COL28A1Q2UY09 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.23□□□□□ -2.05
COL28A1Q2UY09 RNU1-62P-201ENST00000362599 164 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 Y_RNA.460-201ENST00000384255 102 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 MIR625-201ENST00000385047 85 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 U8.13-201ENST00000390842 128 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 MIR300-201ENST00000401138 83 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 RNU6-321P-201ENST00000410912 106 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 AC245102.2-201ENST00000448956 180 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.22□□□□□ -2.05
COL28A1Q2UY09 AL139109.1-201ENST00000455491 297 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 RNU6-976P-201ENST00000516086 111 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.22□□□□□ -2.05
COL28A1Q2UY09 MIR5006-201ENST00000583027 110 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.22□□□□□ -2.05
COL28A1Q2UY09 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.22□□□□□ -2.05
COL28A1Q2UY09 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 AC091925.1-201ENST00000623204 462 ntBASIC2.22□□□□□ -2.05
COL28A1Q2UY09 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.22□□□□□ -2.05
COL28A1Q2UY09 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.21□□□□□ -2.06
COL28A1Q2UY09 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.21□□□□□ -2.06
COL28A1Q2UY09 RNU6-873P-201ENST00000363833 107 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.395-201ENST00000383945 109 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.463-201ENST00000384271 102 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 SNORA40.19-201ENST00000390846 128 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.579-201ENST00000390939 94 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 RNU6-1156P-201ENST00000410365 100 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 AC004866.1-201ENST00000411748 78 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 RPS20P15-201ENST00000412792 311 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 CYCSP49-201ENST00000420810 319 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 EIF1P2-201ENST00000428233 350 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 AC092423.1-201ENST00000430165 186 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 CEP57L1P1-201ENST00000430943 1201 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 UBE2V1P7-201ENST00000446395 340 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 RNU7-14P-201ENST00000459331 62 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 MTND5P16-201ENST00000460269 1703 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.21□□□□□ -2.06
COL28A1Q2UY09 RNU6-1170P-201ENST00000515974 106 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 RNU6-120P-201ENST00000516077 103 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 AC087441.2-201ENST00000529141 262 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC2.21□□□□□ -2.06
COL28A1Q2UY09 AL160413.1-201ENST00000622780 310 ntBASIC2.21□□□□□ -2.06
COL28A1Q2UY09 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.21□□□□□ -2.06
COL28A1Q2UY09 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.21□□□□□ -2.06
COL28A1Q2UY09 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
COL28A1Q2UY09 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.2□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.197-201ENST00000364004 102 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.252-201ENST00000364556 101 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 SNORD42.2-201ENST00000365570 69 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 RNU6-281P-201ENST00000384212 103 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 SNORA67.3-201ENST00000384366 140 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 SNORD14D-201ENST00000384390 87 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 MIR29C-201ENST00000385231 88 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 AC123900.1-201ENST00000420390 96 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.2□□□□□ -2.06
COL28A1Q2UY09 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.2□□□□□ -2.06
COL28A1Q2UY09 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.2□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.639-201ENST00000458981 102 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 MIR2053-201ENST00000459295 91 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 HMGN1P13-201ENST00000505795 138 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 AC026436.1-201ENST00000510537 270 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 SNORA25.14-201ENST00000516481 132 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.2□□□□□ -2.06
COL28A1Q2UY09 GNAI2P1-201ENST00000541815 315 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 SNRPGP18-201ENST00000553000 214 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.2□□□□□ -2.06
COL28A1Q2UY09 MIR5694-201ENST00000581190 76 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.2□□□□□ -2.06
COL28A1Q2UY09 AL359314.1-201ENST00000616913 261 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 AC087588.2-201ENST00000617667 426 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 AC090574.1-201ENST00000623186 233 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 AC008873.1-201ENST00000625051 138 ntBASIC2.2□□□□□ -2.06
COL28A1Q2UY09 Y_RNA.11-201ENST00000362375 109 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 RNU6-222P-201ENST00000362438 107 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 RNU6-743P-201ENST00000364151 106 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 SNORA67.1-201ENST00000364749 141 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 RNU6-1026P-201ENST00000384465 108 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 MIR586-201ENST00000385035 97 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 MIR549A-201ENST00000385268 96 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 SNORA69.1-201ENST00000390904 137 ntBASIC2.19□□□□□ -2.06
COL28A1Q2UY09 MIR1262-201ENST00000408276 93 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 101.1 ms