Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 RNU6-748P-201ENST00000384648 107 ntBASIC3.28□□□□□ -1.88
NKX3-2P78367 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.28□□□□□ -1.88
NKX3-2P78367 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.28□□□□□ -1.88
NKX3-2P78367 RNU6-346P-201ENST00000516288 111 ntBASIC3.28□□□□□ -1.88
NKX3-2P78367 RNU6-155P-201ENST00000516347 100 ntBASIC3.28□□□□□ -1.88
NKX3-2P78367 SNORD19.2-201ENST00000516978 73 ntBASIC3.28□□□□□ -1.88
NKX3-2P78367 AC079600.2-201ENST00000550076 130 ntBASIC3.28□□□□□ -1.88
NKX3-2P78367 MIR3923-201ENST00000579521 83 ntBASIC3.28□□□□□ -1.88
NKX3-2P78367 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.28□□□□□ -1.88
NKX3-2P78367 DEFB117-201ENST00000602356 141 ntBASIC3.28□□□□□ -1.88
NKX3-2P78367 AL356575.1-201ENST00000603008 283 ntBASIC3.28□□□□□ -1.88
NKX3-2P78367 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.27□□□□□ -1.89
NKX3-2P78367 AL136360.1-201ENST00000503377 1900 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 RNU1-75P-201ENST00000347264 129 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 Y_RNA.240-201ENST00000364469 95 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 RNU4-56P-201ENST00000364700 142 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 Y_RNA.415-201ENST00000384012 112 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 RNU6-804P-201ENST00000384286 107 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 AC004866.1-201ENST00000411748 78 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 AC245291.1-201ENST00000419501 328 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 OOSP1P1-201ENST00000423265 274 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.27□□□□□ -1.89
NKX3-2P78367 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.27□□□□□ -1.89
NKX3-2P78367 RNU6-1219P-201ENST00000516143 112 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 RNU1-143P-201ENST00000516296 146 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 MTND5P41-201ENST00000517498 206 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.27□□□□□ -1.89
NKX3-2P78367 MRPS18CP4-201ENST00000535821 231 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 MIR3124-201ENST00000582636 67 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 U1.23-201ENST00000610293 146 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 AC013412.1-201ENST00000610687 192 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 AC104465.1-201ENST00000611365 139 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 RNU1-68P-201ENST00000615382 146 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 U1.39-201ENST00000621562 146 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 AC006111.3-201ENST00000622137 383 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.27□□□□□ -1.89
NKX3-2P78367 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
NKX3-2P78367 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
NKX3-2P78367 FAM35CP-201ENST00000554755 2470 ntBASIC3.27□□□□□ -1.89
NKX3-2P78367 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.27□□□□□ -1.89
NKX3-2P78367 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.27□□□□□ -1.89
NKX3-2P78367 AC010889.1-201ENST00000566193 2666 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 RNU4-82P-201ENST00000362443 140 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 RNU1-62P-201ENST00000362599 164 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 SNORA9.2-201ENST00000365361 133 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 RNU6-211P-201ENST00000384047 107 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 MIR9-1-201ENST00000385198 89 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 RNU2-54P-201ENST00000410299 190 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 AIMP1P2-201ENST00000425294 312 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 AC091021.1-201ENST00000468051 388 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.26□□□□□ -1.89
NKX3-2P78367 PCGEM1.1-201ENST00000613431 131 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 AL365265.1-201ENST00000621045 234 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 MIR3674-201ENST00000636576 68 ntBASIC3.26□□□□□ -1.89
NKX3-2P78367 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
NKX3-2P78367 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.25□□□□□ -1.89
NKX3-2P78367 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.25□□□□□ -1.89
NKX3-2P78367 Y_RNA.8-201ENST00000362353 102 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 RNU4-15P-201ENST00000362613 141 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 AL139095.1-201ENST00000404326 391 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 RNA5SP201-201ENST00000410316 124 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 RNA5SP38-201ENST00000410750 119 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 AC009963.1-201ENST00000417265 157 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.25□□□□□ -1.89
NKX3-2P78367 AC087499.2-201ENST00000432861 149 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 RNU7-23P-201ENST00000459465 62 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 RPL23AP70-201ENST00000483361 460 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 HMGB3P3-201ENST00000510526 400 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.25□□□□□ -1.89
NKX3-2P78367 DEFB131C-201ENST00000528817 165 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.25□□□□□ -1.89
NKX3-2P78367 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC3.25□□□□□ -1.89
NKX3-2P78367 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.25□□□□□ -1.89
NKX3-2P78367 SNRPGP20-201ENST00000604477 205 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 AC004832.5-201ENST00000608677 401 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 AL008718.3-201ENST00000610217 321 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.25□□□□□ -1.89
NKX3-2P78367 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.25□□□□□ -1.89
NKX3-2P78367 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.25□□□□□ -1.89
NKX3-2P78367 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.25□□□□□ -1.89
NKX3-2P78367 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.25□□□□□ -1.89
NKX3-2P78367 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.24□□□□□ -1.89
NKX3-2P78367 RNU6-1010P-201ENST00000362757 107 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 RNU6-653P-201ENST00000363074 106 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 RNU6-454P-201ENST00000364292 107 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 Y_RNA.262-201ENST00000364641 102 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 Y_RNA.304-201ENST00000365011 112 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 RNA5SP252-201ENST00000391131 119 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 RNA5SP475-201ENST00000410568 110 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 RNU6-394P-201ENST00000410735 107 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.24□□□□□ -1.89
NKX3-2P78367 AC096649.2-201ENST00000416186 393 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 AL606753.1-201ENST00000427435 87 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.24□□□□□ -1.89
NKX3-2P78367 HMGN1P18-201ENST00000457642 277 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 RNU7-200P-201ENST00000516105 62 ntBASIC3.24□□□□□ -1.89
NKX3-2P78367 RN7SKP282-201ENST00000516824 299 ntBASIC3.24□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms