Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 RNU6-111P-201ENST00000517179 105 ntBASIC2.56□□□□□ -2
TTC3P53804 AC005520.5-201ENST00000613926 164 ntBASIC2.56□□□□□ -2
TTC3P53804 AC091932.3-201ENST00000624223 323 ntBASIC2.56□□□□□ -2
TTC3P53804 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC2.56□□□□□ -2
TTC3P53804 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.55□□□□□ -2
TTC3P53804 SNORD81.1-201ENST00000363064 77 ntBASIC2.55□□□□□ -2
TTC3P53804 RNU5F-3P-201ENST00000363767 117 ntBASIC2.55□□□□□ -2
TTC3P53804 MIR764-201ENST00000390811 85 ntBASIC2.55□□□□□ -2
TTC3P53804 AL603908.1-201ENST00000406098 201 ntBASIC2.55□□□□□ -2
TTC3P53804 MTCO1P5-201ENST00000433573 344 ntBASIC2.55□□□□□ -2
TTC3P53804 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.55□□□□□ -2
TTC3P53804 AP000705.1-201ENST00000454567 350 ntBASIC2.55□□□□□ -2
TTC3P53804 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.55□□□□□ -2
TTC3P53804 RNU6-138P-201ENST00000515952 107 ntBASIC2.55□□□□□ -2
TTC3P53804 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.55□□□□□ -2
TTC3P53804 FTX_2.1-201ENST00000618816 94 ntBASIC2.55□□□□□ -2
TTC3P53804 SNORA43.4-201ENST00000629559 138 ntBASIC2.55□□□□□ -2
TTC3P53804 AC002543.1-201ENST00000299783 1954 ntBASIC2.55□□□□□ -2
TTC3P53804 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.55□□□□□ -2
TTC3P53804 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.55□□□□□ -2
TTC3P53804 Y_RNA.117-201ENST00000363294 101 ntBASIC2.54□□□□□ -2
TTC3P53804 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.54□□□□□ -2
TTC3P53804 SNORA26.7-201ENST00000391288 122 ntBASIC2.54□□□□□ -2
TTC3P53804 PTGES3P4-201ENST00000426243 356 ntBASIC2.54□□□□□ -2
TTC3P53804 IFNA11P-201ENST00000446352 526 ntBASIC2.54□□□□□ -2
TTC3P53804 DEFB108E-201ENST00000524692 240 ntBASIC2.54□□□□□ -2
TTC3P53804 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC2.54□□□□□ -2
TTC3P53804 AC130289.1-201ENST00000577321 73 ntBASIC2.54□□□□□ -2
TTC3P53804 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.54□□□□□ -2
TTC3P53804 AC011476.5-201ENST00000615594 130 ntBASIC2.54□□□□□ -2
TTC3P53804 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
TTC3P53804 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC2.54□□□□□ -2
TTC3P53804 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
TTC3P53804 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC2.54□□□□□ -2
TTC3P53804 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.54□□□□□ -2
TTC3P53804 UBE2WP1-201ENST00000362030 340 ntBASIC2.54□□□□□ -2
TTC3P53804 DYNLT3P1-201ENST00000378574 347 ntBASIC2.54□□□□□ -2
TTC3P53804 Y_RNA.383-201ENST00000383855 97 ntBASIC2.54□□□□□ -2
TTC3P53804 RNU6-19P-201ENST00000384718 107 ntBASIC2.54□□□□□ -2
TTC3P53804 RN7SKP61-201ENST00000410642 295 ntBASIC2.54□□□□□ -2
TTC3P53804 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.54□□□□□ -2
TTC3P53804 RNA5SP281-201ENST00000516504 135 ntBASIC2.54□□□□□ -2
TTC3P53804 AL356575.1-201ENST00000603008 283 ntBASIC2.54□□□□□ -2
TTC3P53804 AC025754.2-201ENST00000606491 432 ntBASIC2.54□□□□□ -2
TTC3P53804 AC037487.3-201ENST00000606668 112 ntBASIC2.54□□□□□ -2
TTC3P53804 BX284668.6-201ENST00000606899 438 ntBASIC2.54□□□□□ -2
TTC3P53804 AC004792.1-201ENST00000614523 137 ntBASIC2.54□□□□□ -2
TTC3P53804 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.54□□□□□ -2
TTC3P53804 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
TTC3P53804 Y_RNA.292-201ENST00000364904 97 ntBASIC2.53□□□□□ -2
TTC3P53804 RNU6-968P-201ENST00000384076 107 ntBASIC2.53□□□□□ -2
TTC3P53804 Y_RNA.570-201ENST00000384750 101 ntBASIC2.53□□□□□ -2
TTC3P53804 AL513477.1-202ENST00000417061 214 ntBASIC2.53□□□□□ -2
TTC3P53804 SNRPGP7-201ENST00000469016 106 ntBASIC2.53□□□□□ -2
TTC3P53804 SEPT14P8-201ENST00000508026 178 ntBASIC2.53□□□□□ -2
TTC3P53804 AC091874.1-201ENST00000511402 339 ntBASIC2.53□□□□□ -2
TTC3P53804 RNU6-182P-201ENST00000516970 105 ntBASIC2.53□□□□□ -2
TTC3P53804 ACA59.2-201ENST00000517061 156 ntBASIC2.53□□□□□ -2
TTC3P53804 HSPE1P4-201ENST00000550617 308 ntBASIC2.53□□□□□ -2
TTC3P53804 CYP4A27P-201ENST00000567218 190 ntBASIC2.53□□□□□ -2
TTC3P53804 MIR3136-201ENST00000583498 78 ntBASIC2.53□□□□□ -2
TTC3P53804 AC008749.1-201ENST00000597650 306 ntBASIC2.53□□□□□ -2
TTC3P53804 HSPE1P7-201ENST00000604681 321 ntBASIC2.53□□□□□ -2
TTC3P53804 MIR6873-201ENST00000622788 63 ntBASIC2.53□□□□□ -2
TTC3P53804 MIR1291-201ENST00000627649 87 ntBASIC2.53□□□□□ -2
TTC3P53804 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.53□□□□□ -2
TTC3P53804 SNORD114-1-201ENST00000362705 72 ntBASIC2.52□□□□□ -2.01
TTC3P53804 RNU6-529P-201ENST00000363383 104 ntBASIC2.52□□□□□ -2.01
TTC3P53804 Y_RNA.179-201ENST00000363844 90 ntBASIC2.52□□□□□ -2.01
TTC3P53804 RNA5SP456-201ENST00000364002 114 ntBASIC2.52□□□□□ -2.01
TTC3P53804 Y_RNA.200-201ENST00000364018 102 ntBASIC2.52□□□□□ -2.01
TTC3P53804 Y_RNA.269-201ENST00000364685 89 ntBASIC2.52□□□□□ -2.01
TTC3P53804 Y_RNA.319-201ENST00000365138 92 ntBASIC2.52□□□□□ -2.01
TTC3P53804 RNU6-290P-201ENST00000365212 101 ntBASIC2.52□□□□□ -2.01
TTC3P53804 RNU6-187P-201ENST00000384139 106 ntBASIC2.52□□□□□ -2.01
TTC3P53804 AL591034.1-201ENST00000407447 340 ntBASIC2.52□□□□□ -2.01
TTC3P53804 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.52□□□□□ -2.01
TTC3P53804 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.52□□□□□ -2.01
TTC3P53804 snoU13.23-201ENST00000458863 104 ntBASIC2.52□□□□□ -2.01
TTC3P53804 AC087441.2-201ENST00000529141 262 ntBASIC2.52□□□□□ -2.01
TTC3P53804 AC098479.1-201ENST00000609225 154 ntBASIC2.52□□□□□ -2.01
TTC3P53804 FAM35CP-201ENST00000554755 2470 ntBASIC2.52□□□□□ -2.01
TTC3P53804 ZNF204P-201ENST00000416749 2397 ntBASIC2.52□□□□□ -2.01
TTC3P53804 Y_RNA.122-201ENST00000363331 96 ntBASIC2.52□□□□□ -2.01
TTC3P53804 U8.10-201ENST00000384260 133 ntBASIC2.52□□□□□ -2.01
TTC3P53804 RNU6-937P-201ENST00000384325 106 ntBASIC2.52□□□□□ -2.01
TTC3P53804 Y_RNA.478-201ENST00000384358 107 ntBASIC2.52□□□□□ -2.01
TTC3P53804 MIR329-1-201ENST00000385028 80 ntBASIC2.52□□□□□ -2.01
TTC3P53804 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.52□□□□□ -2.01
TTC3P53804 RN7SL499P-201ENST00000481141 276 ntBASIC2.52□□□□□ -2.01
TTC3P53804 AIG1P1-201ENST00000503376 148 ntBASIC2.52□□□□□ -2.01
TTC3P53804 SNORA40.9-201ENST00000515895 93 ntBASIC2.52□□□□□ -2.01
TTC3P53804 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.52□□□□□ -2.01
TTC3P53804 MIR5007-201ENST00000583098 95 ntBASIC2.52□□□□□ -2.01
TTC3P53804 AL138963.2-201ENST00000605137 226 ntBASIC2.52□□□□□ -2.01
TTC3P53804 TCL6_2.1-201ENST00000615162 119 ntBASIC2.52□□□□□ -2.01
TTC3P53804 MIR6766-201ENST00000622641 72 ntBASIC2.52□□□□□ -2.01
TTC3P53804 AC010680.1-201ENST00000590024 3590 ntBASIC2.52□□□□□ -2.01
TTC3P53804 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
TTC3P53804 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.52□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms