Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC-0.66□□□□□ -2.52
CUX1P39880 EEF1E1P1-201ENST00000446998 430 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 AL139824.2-201ENST00000458731 1095 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 RNU7-159P-201ENST00000459284 62 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 AL163973.1-201ENST00000484753 577 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 RNU2-34P-201ENST00000516534 121 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 RNA5SP94-201ENST00000516917 108 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 RNU2-46P-201ENST00000517038 113 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 MIR5697-201ENST00000578045 78 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 MIR3923-201ENST00000579521 83 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 AP000811.1-201ENST00000603803 651 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 RBM11P1-201ENST00000604951 799 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 AC122133.1-201ENST00000613964 233 ntBASIC-0.66□□□□□ -2.52
CUX1P39880 MTND4P4-201ENST00000439033 1366 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 RNU6-545P-201ENST00000362681 104 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 Y_RNA.287-201ENST00000364853 94 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 RNU6-395P-201ENST00000365662 106 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 SNORA8.2-201ENST00000384372 139 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 MIR520G-201ENST00000385064 90 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 MIR520H-201ENST00000385126 88 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 RNU6-127P-201ENST00000390897 107 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 RNA5SP201-201ENST00000410316 124 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 RNU6-284P-201ENST00000411105 106 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC-0.67□□□□□ -2.52
CUX1P39880 AC091021.1-201ENST00000468051 388 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC-0.67□□□□□ -2.52
CUX1P39880 RNU6-567P-201ENST00000516746 107 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 AC138915.2-201ENST00000569776 97 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 AC174048.1-201ENST00000603389 144 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 U6.42-201ENST00000618440 107 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 AC006927.4-201ENST00000639187 543 ntBASIC-0.67□□□□□ -2.52
CUX1P39880 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC-0.67□□□□□ -2.52
CUX1P39880 MIR412-201ENST00000362142 91 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 SNORD115-48-201ENST00000364764 76 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 Y_RNA.288-201ENST00000364854 92 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 MRPL42P3-201ENST00000401492 326 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 AL663109.1-201ENST00000411498 844 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC-0.68□□□□□ -2.52
CUX1P39880 RNU7-140P-201ENST00000459546 60 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 RNU6-1037P-201ENST00000459571 107 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 RNU6-782P-201ENST00000516852 104 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC-0.68□□□□□ -2.52
CUX1P39880 DEFB131D-201ENST00000526803 184 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 DEFB131C-201ENST00000528817 165 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC-0.68□□□□□ -2.52
CUX1P39880 AC087883.1-201ENST00000551882 391 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC-0.68□□□□□ -2.52
CUX1P39880 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC-0.68□□□□□ -2.52
CUX1P39880 MIR6755-201ENST00000619993 66 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 SCARNA4-202ENST00000625402 129 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 MTND5P42-201ENST00000637720 498 ntBASIC-0.68□□□□□ -2.52
CUX1P39880 RNA5SP205-201ENST00000364653 136 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 RNU6-817P-201ENST00000391083 104 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 RNU6-796P-201ENST00000391086 107 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 AC106883.1-201ENST00000418805 562 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 AL354692.1-201ENST00000423044 315 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 MRPS10P2-201ENST00000431226 381 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 HSFY5P-201ENST00000453726 309 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 RNU7-136P-201ENST00000458819 69 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 AC007547.1-201ENST00000462177 490 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 AP001189.2-201ENST00000527320 189 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 TMF1P1-201ENST00000576058 373 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 AC110760.3-201ENST00000598794 467 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 AC012507.3-201ENST00000603556 477 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 AL138889.2-201ENST00000603883 242 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 AC120349.2-201ENST00000625002 298 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 U6.108-201ENST00000637764 58 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC-0.69□□□□□ -2.52
CUX1P39880 RNU6-735P-201ENST00000410612 107 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC-0.69□□□□□ -2.52
CUX1P39880 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC-0.69□□□□□ -2.52
CUX1P39880 AC114755.3-201ENST00000481111 251 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 MIR4293-201ENST00000584305 78 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 RMST_7.1-201ENST00000621935 268 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 AL391099.1-201ENST00000624635 187 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 SNORD98-201ENST00000636377 67 ntBASIC-0.69□□□□□ -2.52
CUX1P39880 RNU6-353P-201ENST00000364266 108 ntBASIC-0.7□□□□□ -2.52
CUX1P39880 snoZ40.1-201ENST00000364540 72 ntBASIC-0.7□□□□□ -2.52
CUX1P39880 RNU6-549P-201ENST00000384433 107 ntBASIC-0.7□□□□□ -2.52
CUX1P39880 MIR300-201ENST00000401138 83 ntBASIC-0.7□□□□□ -2.52
CUX1P39880 MTND4P24-201ENST00000424002 397 ntBASIC-0.7□□□□□ -2.52
CUX1P39880 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC-0.7□□□□□ -2.52
CUX1P39880 AP000870.1-201ENST00000472927 406 ntBASIC-0.7□□□□□ -2.52
CUX1P39880 SUMO2P5-201ENST00000506790 245 ntBASIC-0.7□□□□□ -2.52
CUX1P39880 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC-0.7□□□□□ -2.52
CUX1P39880 ZNF321P-202ENST00000550843 495 ntBASIC-0.7□□□□□ -2.52
CUX1P39880 MIR548AO-201ENST00000579992 96 ntBASIC-0.7□□□□□ -2.52
CUX1P39880 AC020913.3-201ENST00000594678 125 ntTSL 3 BASIC-0.7□□□□□ -2.52
CUX1P39880 AC064872.1-201ENST00000604823 1072 ntBASIC-0.7□□□□□ -2.52
CUX1P39880 CDR1-202ENST00000625883 1485 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 Y_RNA.52-201ENST00000362760 96 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 RNU4-56P-201ENST00000364700 142 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 RNU6-652P-201ENST00000365488 107 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 MIR587-201ENST00000384845 96 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 SNORA12.1-201ENST00000390873 148 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 AL136310.1-201ENST00000404926 654 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 MTND1P31-201ENST00000449206 961 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 AC093850.1-201ENST00000454121 251 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 AC093899.1-201ENST00000457984 376 ntBASIC-0.71□□□□□ -2.52
CUX1P39880 MTCO3P9-201ENST00000506989 781 ntBASIC-0.71□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 125.6 ms