Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SNORD73A-201ENST00000386062 65 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC0.5□□□□□ -2.33
LIMS3P0CW19 AL355796.1-201ENST00000406706 323 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 RNU6-1186P-201ENST00000410429 97 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.5□□□□□ -2.33
LIMS3P0CW19 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.5□□□□□ -2.33
LIMS3P0CW19 FABP5P4-201ENST00000437203 171 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 U8.21-201ENST00000459536 136 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 AL163540.1-201ENST00000485382 386 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 RNU7-99P-201ENST00000516271 62 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 AC106038.2-201ENST00000520706 568 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 AC004812.1-201ENST00000540773 146 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 AL137100.2-201ENST00000555786 315 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.5□□□□□ -2.33
LIMS3P0CW19 SNORA28-201ENST00000606769 126 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 AC139792.3-201ENST00000623525 224 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 AC009161.2-201ENST00000624626 138 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 SCARNA4-201ENST00000629045 128 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.49□□□□□ -2.33
LIMS3P0CW19 ANKRD20A17P-201ENST00000511745 1330 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.49□□□□□ -2.33
LIMS3P0CW19 AP000568.1-201ENST00000282964 442 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
LIMS3P0CW19 SNORA2.2-201ENST00000365473 135 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 MIR508-201ENST00000384857 115 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 RNU6-584P-201ENST00000410350 95 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 AC133104.1-201ENST00000429100 218 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 MTND3P9-201ENST00000429526 346 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC0.49□□□□□ -2.33
LIMS3P0CW19 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.49□□□□□ -2.33
LIMS3P0CW19 RPEP5-201ENST00000441137 268 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 AL157398.1-201ENST00000452981 186 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 BET1P1-201ENST00000482276 359 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 RNU7-128P-201ENST00000517247 62 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 FGF7P1-201ENST00000582820 288 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 AC012557.2-201ENST00000605919 418 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 AC137590.2-201ENST00000619709 240 ntBASIC0.49□□□□□ -2.33
LIMS3P0CW19 RNU6-282P-201ENST00000365357 103 ntBASIC0.48□□□□□ -2.33
LIMS3P0CW19 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC0.48□□□□□ -2.33
LIMS3P0CW19 RNU6-903P-201ENST00000391270 109 ntBASIC0.48□□□□□ -2.33
LIMS3P0CW19 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC0.48□□□□□ -2.33
LIMS3P0CW19 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.48□□□□□ -2.33
LIMS3P0CW19 HMGN1P7-201ENST00000491722 313 ntBASIC0.48□□□□□ -2.33
LIMS3P0CW19 AC005840.1-201ENST00000498412 377 ntBASIC0.48□□□□□ -2.33
LIMS3P0CW19 AC106744.2-201ENST00000513955 898 ntTSL 5 BASIC0.48□□□□□ -2.33
LIMS3P0CW19 RNA5SP121-201ENST00000516537 101 ntBASIC0.48□□□□□ -2.33
LIMS3P0CW19 snoU13.31-201ENST00000607291 104 ntBASIC0.48□□□□□ -2.33
LIMS3P0CW19 U6.73-201ENST00000619194 103 ntBASIC0.48□□□□□ -2.33
LIMS3P0CW19 uc_338.17-201ENST00000619633 179 ntBASIC0.48□□□□□ -2.33
LIMS3P0CW19 SNORD116-13-201ENST00000384408 92 ntBASIC0.47□□□□□ -2.33
LIMS3P0CW19 MIR520E-201ENST00000384867 87 ntBASIC0.47□□□□□ -2.33
LIMS3P0CW19 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC0.47□□□□□ -2.33
LIMS3P0CW19 CETN4P-201ENST00000432407 469 ntBASIC0.47□□□□□ -2.33
LIMS3P0CW19 AC092473.1-201ENST00000441098 221 ntBASIC0.47□□□□□ -2.33
LIMS3P0CW19 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.47□□□□□ -2.33
LIMS3P0CW19 STAG3L5P-204ENST00000443759 179 ntBASIC0.47□□□□□ -2.33
LIMS3P0CW19 SNORA70.12-201ENST00000516084 153 ntBASIC0.47□□□□□ -2.33
LIMS3P0CW19 RNU6-917P-201ENST00000516294 104 ntBASIC0.47□□□□□ -2.33
LIMS3P0CW19 RNU4-54P-201ENST00000516428 129 ntBASIC0.47□□□□□ -2.33
LIMS3P0CW19 RNU1-117P-201ENST00000517041 158 ntBASIC0.47□□□□□ -2.33
LIMS3P0CW19 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.47□□□□□ -2.33
LIMS3P0CW19 AC090616.2-202ENST00000584248 222 ntBASIC0.47□□□□□ -2.33
LIMS3P0CW19 AC016727.1-205ENST00000605437 569 ntBASIC0.47□□□□□ -2.33
LIMS3P0CW19 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.47□□□□□ -2.33
LIMS3P0CW19 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.47□□□□□ -2.33
LIMS3P0CW19 RNU6-181P-201ENST00000363225 107 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 Y_RNA.123-201ENST00000363338 102 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 U3.8-201ENST00000363675 217 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 RNU6-517P-201ENST00000384362 110 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 Y_RNA.560-201ENST00000384689 102 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 RNU6-482P-201ENST00000391068 107 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 FGF7P8-201ENST00000402994 292 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.46□□□□□ -2.34
LIMS3P0CW19 AL035398.1-201ENST00000430869 322 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.46□□□□□ -2.34
LIMS3P0CW19 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.46□□□□□ -2.34
LIMS3P0CW19 AL356010.1-201ENST00000456364 102 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 AC098869.1-201ENST00000481627 292 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 AC113410.1-201ENST00000505029 247 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 SNORA18.6-201ENST00000516792 115 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 RNU6-445P-201ENST00000516949 107 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC0.46□□□□□ -2.34
LIMS3P0CW19 MRPS36P4-201ENST00000534436 298 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC0.46□□□□□ -2.34
LIMS3P0CW19 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC0.46□□□□□ -2.34
LIMS3P0CW19 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC0.46□□□□□ -2.34
LIMS3P0CW19 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC0.46□□□□□ -2.34
LIMS3P0CW19 PRELID3BP2-201ENST00000605362 201 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 AL359821.1-201ENST00000605519 182 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 SNORD11B-201ENST00000607707 90 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 AC087683.2-201ENST00000611384 326 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 RMST_3.1-201ENST00000611651 109 ntBASIC0.46□□□□□ -2.34
LIMS3P0CW19 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.46□□□□□ -2.34
LIMS3P0CW19 ZNF204P-201ENST00000416749 2397 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 AC023934.1-201ENST00000574529 2389 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 SNORA75.2-201ENST00000391138 150 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 SNORA75.3-201ENST00000391231 150 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 RNU2-9P-201ENST00000410194 145 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 MTCO2P7-201ENST00000446518 666 ntBASIC0.45□□□□□ -2.34
LIMS3P0CW19 SNORD42A-201ENST00000459584 64 ntBASIC0.45□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 206 ms