Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXD4P09016 AC145146.1-201ENST00000496370 254 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC1.89□□□□□ -2.11
HOXD4P09016 RNU7-175P-201ENST00000515915 61 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 RNA5SP182-201ENST00000516064 82 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 RNU6-567P-201ENST00000516746 107 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 RNU2-44P-201ENST00000516795 194 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 SNORA48.11-201ENST00000517015 89 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.89□□□□□ -2.11
HOXD4P09016 CYCSP26-201ENST00000534107 320 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 CYP4A27P-201ENST00000567218 190 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 MIR3171-201ENST00000584270 74 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 AL355297.2-201ENST00000604792 129 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 AC008121.3-201ENST00000618726 433 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 AC091925.1-201ENST00000623204 462 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 AC091932.3-201ENST00000624223 323 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 AC090517.3-201ENST00000625170 141 ntBASIC1.89□□□□□ -2.11
HOXD4P09016 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC1.89□□□□□ -2.11
HOXD4P09016 RNY3P11-201ENST00000364153 102 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 Y_RNA.428-201ENST00000384078 102 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 RNU6-17P-201ENST00000384245 107 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 RNU6-378P-201ENST00000384324 107 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 RNY1P14-201ENST00000384426 108 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 RNU6-18P-201ENST00000384527 107 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 SNORA46.1-201ENST00000391069 153 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 MIR208B-201ENST00000401172 77 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 RNA5SP201-201ENST00000410316 124 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 AC007098.1-201ENST00000420122 367 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 AL035666.1-201ENST00000446195 348 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 OR2AQ1P-201ENST00000451972 200 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.88□□□□□ -2.11
HOXD4P09016 Y_RNA.706-201ENST00000516933 99 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 Y_RNA.711-201ENST00000516993 102 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 SNORD116.3-201ENST00000517176 78 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.88□□□□□ -2.11
HOXD4P09016 MIR3923-201ENST00000579521 83 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 7SK.7-201ENST00000603504 247 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 AL670379.2-201ENST00000604983 252 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 AC100812.1-201ENST00000607622 580 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 RMST_6.1-201ENST00000611980 203 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 AC007485.1-201ENST00000616755 206 ntBASIC1.88□□□□□ -2.11
HOXD4P09016 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.88□□□□□ -2.11
HOXD4P09016 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.87□□□□□ -2.11
HOXD4P09016 RNU6-222P-201ENST00000362438 107 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 Y_RNA.106-201ENST00000363189 100 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 Y_RNA.314-201ENST00000365114 102 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 SNORA22B-201ENST00000383876 138 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 RNU6-1274P-201ENST00000384557 107 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 SNORA12-201ENST00000391162 147 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 MIR190B-201ENST00000401119 79 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 SUMO2P12-201ENST00000405924 140 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 MTCYBP2-201ENST00000407745 171 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 SNORD23.1-201ENST00000408212 104 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 RPS26P42-201ENST00000413485 326 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
HOXD4P09016 AC099799.1-201ENST00000439809 192 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 AC009238.1-201ENST00000442165 424 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.87□□□□□ -2.11
HOXD4P09016 AC009237.6-201ENST00000446969 424 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 CHEK2P4-201ENST00000450340 246 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 AL021397.1-201ENST00000451806 248 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 RN7SL274P-201ENST00000492268 272 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 RNU1-40P-201ENST00000516816 164 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 RNU1-97P-201ENST00000516872 164 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 RN7SKP295-201ENST00000517264 153 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 AP003072.1-201ENST00000531740 145 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 AC027288.2-201ENST00000553028 243 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC1.87□□□□□ -2.11
HOXD4P09016 AL353621.2-201ENST00000605340 133 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.87□□□□□ -2.11
HOXD4P09016 PCGEM1.1-201ENST00000613431 131 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 AC005520.5-201ENST00000613926 164 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 AC087588.2-201ENST00000617667 426 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 AC099654.10-201ENST00000640395 161 ntBASIC1.87□□□□□ -2.11
HOXD4P09016 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
HOXD4P09016 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.86□□□□□ -2.11
HOXD4P09016 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
HOXD4P09016 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
HOXD4P09016 Y_RNA.148-201ENST00000363557 117 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 RNU4-42P-201ENST00000364738 142 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 MIR625-201ENST00000385047 85 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 MIR153-2-201ENST00000385225 87 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 MIR549A-201ENST00000385268 96 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 RNU6-1093P-201ENST00000391194 107 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 RNA5SP270-201ENST00000411361 118 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 MCFD2P1-201ENST00000417812 300 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.86□□□□□ -2.11
HOXD4P09016 MTND4P19-201ENST00000446659 478 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 RNU7-169P-201ENST00000459456 61 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 AC025033.1-201ENST00000463883 194 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 AL163540.1-201ENST00000485382 386 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.86□□□□□ -2.11
HOXD4P09016 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.86□□□□□ -2.11
HOXD4P09016 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.86□□□□□ -2.11
HOXD4P09016 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.86□□□□□ -2.11
HOXD4P09016 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.86□□□□□ -2.11
HOXD4P09016 AC092447.9-201ENST00000603395 144 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 AC006157.1-201ENST00000611750 366 ntBASIC1.86□□□□□ -2.11
HOXD4P09016 AC007742.2-201ENST00000618226 398 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 168.3 ms