Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 AP000654.2-201ENST00000605633 586 ntBASIC1.32□□□□□ -2.2
CTDNEP1O95476 AL590240.4-201ENST00000616908 390 ntBASIC1.32□□□□□ -2.2
CTDNEP1O95476 AC009248.2-201ENST00000619826 254 ntBASIC1.32□□□□□ -2.2
CTDNEP1O95476 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.32□□□□□ -2.2
CTDNEP1O95476 AC022513.1-201ENST00000624512 117 ntBASIC1.32□□□□□ -2.2
CTDNEP1O95476 RNU1-58P-201ENST00000362413 163 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 Y_RNA.99-201ENST00000363138 105 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 RNU6-1059P-201ENST00000363752 98 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 SNORA18.2-201ENST00000383865 132 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 RNU6-338P-201ENST00000383888 105 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 RNU6-790P-201ENST00000384479 105 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 RNA5SP494-201ENST00000410653 129 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 SNRPEP8-201ENST00000442866 260 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 MTND1P17-201ENST00000448961 204 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.31□□□□□ -2.2
CTDNEP1O95476 AC112492.4-201ENST00000456549 352 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 Y_RNA.638-201ENST00000459374 113 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 RNU6-329P-201ENST00000459618 107 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 AC082651.2-201ENST00000496833 166 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 MTCO2P30-201ENST00000503662 364 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 AC114801.2-201ENST00000503825 781 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.31□□□□□ -2.2
CTDNEP1O95476 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 RNU6-358P-201ENST00000516564 75 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 RNU6-567P-201ENST00000516746 107 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 RNU6-566P-201ENST00000516790 107 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 RNA5SP454-201ENST00000517231 127 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 AP005660.1-201ENST00000522972 293 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 AF235103.2-201ENST00000525753 346 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 AC090517.1-201ENST00000569307 266 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 MIR3169-201ENST00000578032 83 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 AC060780.3-201ENST00000589464 80 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 AL022345.1-201ENST00000607292 135 ntBASIC1.31□□□□□ -2.2
CTDNEP1O95476 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CTDNEP1O95476 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.31□□□□□ -2.2
CTDNEP1O95476 RNA5SP493-201ENST00000364115 91 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 RNU6-53P-201ENST00000365367 106 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.3□□□□□ -2.2
CTDNEP1O95476 AC004965.1-201ENST00000413033 213 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 RPS26P42-201ENST00000413485 326 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 AC087477.1-201ENST00000465747 340 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 AC132942.1-201ENST00000486753 483 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.3□□□□□ -2.2
CTDNEP1O95476 AL160236.1-201ENST00000556317 195 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 MIR4742-201ENST00000581069 85 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 AC010900.2-201ENST00000604508 210 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 AC092794.1-201ENST00000612734 582 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 AL157834.3-201ENST00000615543 103 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.3□□□□□ -2.2
CTDNEP1O95476 MTND4P5-201ENST00000435821 1374 ntBASIC1.3□□□□□ -2.2
CTDNEP1O95476 AC233981.2-201ENST00000611524 1614 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 MIR424-201ENST00000362227 98 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 Y_RNA.248-201ENST00000364501 109 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 RNU6-842P-201ENST00000384269 107 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 Y_RNA.473-201ENST00000384333 102 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 RNU6-933P-201ENST00000384424 107 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
CTDNEP1O95476 AL357139.1-201ENST00000407792 426 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.29□□□□□ -2.2
CTDNEP1O95476 SDAD1P3-201ENST00000427380 333 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.29□□□□□ -2.2
CTDNEP1O95476 AL353572.1-201ENST00000442490 417 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 AL035666.1-201ENST00000446195 348 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 RNU7-14P-201ENST00000459331 62 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.29□□□□□ -2.2
CTDNEP1O95476 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.29□□□□□ -2.2
CTDNEP1O95476 SUB1P3-201ENST00000564581 315 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.29□□□□□ -2.2
CTDNEP1O95476 SNORA59B-202ENST00000578183 701 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 POLR3GP2-201ENST00000588366 668 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 PRR13P7-201ENST00000605538 430 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 AC019193.3-201ENST00000609144 554 ntBASIC1.29□□□□□ -2.2
CTDNEP1O95476 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.29□□□□□ -2.2
CTDNEP1O95476 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.29□□□□□ -2.2
CTDNEP1O95476 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.29□□□□□ -2.2
CTDNEP1O95476 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.29□□□□□ -2.2
CTDNEP1O95476 LINC02555-201ENST00000563933 1951 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
CTDNEP1O95476 RNU6-545P-201ENST00000362681 104 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.28□□□□□ -2.2
CTDNEP1O95476 AL356776.1-201ENST00000406574 447 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 MIR1285-1-201ENST00000408593 84 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.28□□□□□ -2.2
CTDNEP1O95476 AC009161.1-201ENST00000417306 376 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 AC123900.1-201ENST00000420390 96 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 AC139712.2-201ENST00000424302 339 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 USP9YP30-201ENST00000430729 455 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 DAP3P1-201ENST00000441522 278 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 MTCO1P44-201ENST00000441935 243 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.28□□□□□ -2.2
CTDNEP1O95476 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
CTDNEP1O95476 OR2AQ1P-201ENST00000451972 200 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 MTCO3P8-201ENST00000453691 755 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.28□□□□□ -2.2
CTDNEP1O95476 AC016925.1-201ENST00000458303 298 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 AC007215.1-201ENST00000464893 276 ntBASIC1.28□□□□□ -2.2
CTDNEP1O95476 AC010531.2-201ENST00000465012 153 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms