Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.8□□□□□ -2.12
SIX3O95343 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.8□□□□□ -2.12
SIX3O95343 RNU6-864P-201ENST00000516256 108 ntBASIC1.8□□□□□ -2.12
SIX3O95343 RNA5SP220-201ENST00000516298 104 ntBASIC1.8□□□□□ -2.12
SIX3O95343 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.8□□□□□ -2.12
SIX3O95343 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.8□□□□□ -2.12
SIX3O95343 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.8□□□□□ -2.12
SIX3O95343 SUB1P3-201ENST00000564581 315 ntBASIC1.8□□□□□ -2.12
SIX3O95343 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.8□□□□□ -2.12
SIX3O95343 AL078603.1-201ENST00000603824 313 ntBASIC1.8□□□□□ -2.12
SIX3O95343 MIR6128-201ENST00000615528 109 ntBASIC1.8□□□□□ -2.12
SIX3O95343 AL078596.1-201ENST00000624856 447 ntBASIC1.8□□□□□ -2.12
SIX3O95343 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.8□□□□□ -2.12
SIX3O95343 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
SIX3O95343 RNU6-862P-201ENST00000362804 105 ntBASIC1.79□□□□□ -2.12
SIX3O95343 Y_RNA.135-201ENST00000363439 95 ntBASIC1.79□□□□□ -2.12
SIX3O95343 RNU1-96P-201ENST00000364163 162 ntBASIC1.79□□□□□ -2.12
SIX3O95343 MIR153-2-201ENST00000385225 87 ntBASIC1.79□□□□□ -2.12
SIX3O95343 MIR1253-201ENST00000408273 105 ntBASIC1.79□□□□□ -2.12
SIX3O95343 RNA5SP100-201ENST00000410903 110 ntBASIC1.79□□□□□ -2.12
SIX3O95343 RNA5SP59-201ENST00000410922 110 ntBASIC1.79□□□□□ -2.12
SIX3O95343 FCF1P9-201ENST00000412546 282 ntBASIC1.79□□□□□ -2.12
SIX3O95343 AC009310.1-201ENST00000414414 451 ntBASIC1.79□□□□□ -2.12
SIX3O95343 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1.79□□□□□ -2.12
SIX3O95343 MTCO1P44-201ENST00000441935 243 ntBASIC1.79□□□□□ -2.12
SIX3O95343 AC016717.1-201ENST00000448918 286 ntBASIC1.79□□□□□ -2.12
SIX3O95343 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.79□□□□□ -2.12
SIX3O95343 snoU13.30-201ENST00000458951 104 ntBASIC1.79□□□□□ -2.12
SIX3O95343 AC007215.1-201ENST00000464893 276 ntBASIC1.79□□□□□ -2.12
SIX3O95343 FO393415.2-201ENST00000480085 343 ntBASIC1.79□□□□□ -2.12
SIX3O95343 RPS29P11-201ENST00000496507 171 ntBASIC1.79□□□□□ -2.12
SIX3O95343 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC1.79□□□□□ -2.12
SIX3O95343 RNU2-34P-201ENST00000516534 121 ntBASIC1.79□□□□□ -2.12
SIX3O95343 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.79□□□□□ -2.12
SIX3O95343 MIR4790-201ENST00000577799 79 ntBASIC1.79□□□□□ -2.12
SIX3O95343 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC1.79□□□□□ -2.12
SIX3O95343 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.79□□□□□ -2.12
SIX3O95343 MIR6734-201ENST00000621166 68 ntBASIC1.79□□□□□ -2.12
SIX3O95343 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.79□□□□□ -2.12
SIX3O95343 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.78□□□□□ -2.12
SIX3O95343 BX322639.1-202ENST00000423987 2213 ntBASIC1.78□□□□□ -2.12
SIX3O95343 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SIX3O95343 Y_RNA.36-201ENST00000362602 112 ntBASIC1.78□□□□□ -2.12
SIX3O95343 Y_RNA.319-201ENST00000365138 92 ntBASIC1.78□□□□□ -2.12
SIX3O95343 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.78□□□□□ -2.12
SIX3O95343 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.78□□□□□ -2.12
SIX3O95343 AC079354.2-201ENST00000453523 154 ntBASIC1.78□□□□□ -2.12
SIX3O95343 AC112492.4-201ENST00000456549 352 ntBASIC1.78□□□□□ -2.12
SIX3O95343 PPP1R2P5-201ENST00000457256 603 ntBASIC1.78□□□□□ -2.12
SIX3O95343 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.78□□□□□ -2.12
SIX3O95343 SNORA31.17-201ENST00000516953 127 ntBASIC1.78□□□□□ -2.12
SIX3O95343 MIR4419B-201ENST00000577260 68 ntBASIC1.78□□□□□ -2.12
SIX3O95343 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.77□□□□□ -2.13
SIX3O95343 MIR340-201ENST00000362125 95 ntBASIC1.77□□□□□ -2.13
SIX3O95343 RNU6-414P-201ENST00000363705 104 ntBASIC1.77□□□□□ -2.13
SIX3O95343 Y_RNA.191-201ENST00000363972 113 ntBASIC1.77□□□□□ -2.13
SIX3O95343 RNU6-831P-201ENST00000384548 107 ntBASIC1.77□□□□□ -2.13
SIX3O95343 MIR487A-201ENST00000385009 80 ntBASIC1.77□□□□□ -2.13
SIX3O95343 RPL30P16-201ENST00000419341 429 ntBASIC1.77□□□□□ -2.13
SIX3O95343 AL445685.2-201ENST00000422551 342 ntBASIC1.77□□□□□ -2.13
SIX3O95343 HMGN1P33-201ENST00000432945 451 ntBASIC1.77□□□□□ -2.13
SIX3O95343 Z82188.1-201ENST00000436709 154 ntBASIC1.77□□□□□ -2.13
SIX3O95343 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.77□□□□□ -2.13
SIX3O95343 RPS4XP11-201ENST00000446897 772 ntBASIC1.77□□□□□ -2.13
SIX3O95343 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.77□□□□□ -2.13
SIX3O95343 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.77□□□□□ -2.13
SIX3O95343 AC067942.3-201ENST00000512025 362 ntBASIC1.77□□□□□ -2.13
SIX3O95343 RNU7-175P-201ENST00000515915 61 ntBASIC1.77□□□□□ -2.13
SIX3O95343 RNU4-49P-201ENST00000516080 140 ntBASIC1.77□□□□□ -2.13
SIX3O95343 SNORA25.14-201ENST00000516481 132 ntBASIC1.77□□□□□ -2.13
SIX3O95343 RNU6-566P-201ENST00000516790 107 ntBASIC1.77□□□□□ -2.13
SIX3O95343 RNA5SP454-201ENST00000517231 127 ntBASIC1.77□□□□□ -2.13
SIX3O95343 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.77□□□□□ -2.13
SIX3O95343 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.77□□□□□ -2.13
SIX3O95343 AC006001.4-201ENST00000622243 395 ntBASIC1.77□□□□□ -2.13
SIX3O95343 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.77□□□□□ -2.13
SIX3O95343 Y_RNA.86-201ENST00000363020 111 ntBASIC1.76□□□□□ -2.13
SIX3O95343 MIR520A-201ENST00000384862 85 ntBASIC1.76□□□□□ -2.13
SIX3O95343 MIR30A-201ENST00000385092 71 ntBASIC1.76□□□□□ -2.13
SIX3O95343 RNU6-510P-201ENST00000391239 108 ntBASIC1.76□□□□□ -2.13
SIX3O95343 RNU6-57P-201ENST00000411348 103 ntBASIC1.76□□□□□ -2.13
SIX3O95343 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.76□□□□□ -2.13
SIX3O95343 AP1B1P2-201ENST00000416196 106 ntBASIC1.76□□□□□ -2.13
SIX3O95343 EIF1P1-201ENST00000421436 341 ntBASIC1.76□□□□□ -2.13
SIX3O95343 MTCO3P46-201ENST00000425787 232 ntBASIC1.76□□□□□ -2.13
SIX3O95343 AL445305.1-201ENST00000432577 575 ntBASIC1.76□□□□□ -2.13
SIX3O95343 AC011406.1-201ENST00000512440 370 ntBASIC1.76□□□□□ -2.13
SIX3O95343 RNU6-1146P-201ENST00000516282 102 ntBASIC1.76□□□□□ -2.13
SIX3O95343 RNU6-856P-201ENST00000516959 98 ntBASIC1.76□□□□□ -2.13
SIX3O95343 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.76□□□□□ -2.13
SIX3O95343 AC110588.1-201ENST00000559699 137 ntBASIC1.76□□□□□ -2.13
SIX3O95343 AC022254.1-201ENST00000567857 235 ntBASIC1.76□□□□□ -2.13
SIX3O95343 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC1.76□□□□□ -2.13
SIX3O95343 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.76□□□□□ -2.13
SIX3O95343 BX248123.2-201ENST00000606318 124 ntBASIC1.76□□□□□ -2.13
SIX3O95343 SNORD11B-201ENST00000607707 90 ntBASIC1.76□□□□□ -2.13
SIX3O95343 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
SIX3O95343 RNU5F-3P-201ENST00000363767 117 ntBASIC1.75□□□□□ -2.13
SIX3O95343 RNU6-457P-201ENST00000363999 107 ntBASIC1.75□□□□□ -2.13
SIX3O95343 SNORD115-32-201ENST00000364079 82 ntBASIC1.75□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms