Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 AL390729.2-201ENST00000416137 156 ntBASIC2.8□□□□□ -1.96
PROM1O43490 AL139281.1-201ENST00000422120 335 ntBASIC2.8□□□□□ -1.96
PROM1O43490 RPL39P40-201ENST00000445481 146 ntBASIC2.8□□□□□ -1.96
PROM1O43490 RPL23AP3-201ENST00000453844 468 ntBASIC2.8□□□□□ -1.96
PROM1O43490 AC007215.1-201ENST00000464893 276 ntBASIC2.8□□□□□ -1.96
PROM1O43490 AC091179.3-201ENST00000474761 144 ntBASIC2.8□□□□□ -1.96
PROM1O43490 RNU2-31P-201ENST00000516954 155 ntBASIC2.8□□□□□ -1.96
PROM1O43490 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.8□□□□□ -1.96
PROM1O43490 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.8□□□□□ -1.96
PROM1O43490 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC2.8□□□□□ -1.96
PROM1O43490 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.8□□□□□ -1.96
PROM1O43490 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC2.8□□□□□ -1.96
PROM1O43490 AC009779.6-201ENST00000603972 165 ntBASIC2.8□□□□□ -1.96
PROM1O43490 MIR7515-201ENST00000637837 67 ntBASIC2.8□□□□□ -1.96
PROM1O43490 LCOR-205ENST00000421806 16004 ntTSL 3 BASIC2.8□□□□□ -1.96
PROM1O43490 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
PROM1O43490 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.79□□□□□ -1.96
PROM1O43490 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC2.79□□□□□ -1.96
PROM1O43490 AC000403.1-201ENST00000613696 3585 ntBASIC2.79□□□□□ -1.96
PROM1O43490 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.79□□□□□ -1.96
PROM1O43490 snoU2_19.1-201ENST00000362361 80 ntBASIC2.79□□□□□ -1.96
PROM1O43490 RNU6-1210P-201ENST00000363775 107 ntBASIC2.79□□□□□ -1.96
PROM1O43490 Y_RNA.230-201ENST00000364348 109 ntBASIC2.79□□□□□ -1.96
PROM1O43490 Y_RNA.331-201ENST00000365267 102 ntBASIC2.79□□□□□ -1.96
PROM1O43490 RNU6-245P-201ENST00000384020 107 ntBASIC2.79□□□□□ -1.96
PROM1O43490 RNU6-209P-201ENST00000384118 107 ntBASIC2.79□□□□□ -1.96
PROM1O43490 SNORA18.3-201ENST00000384122 132 ntBASIC2.79□□□□□ -1.96
PROM1O43490 RNU1-57P-201ENST00000384491 166 ntBASIC2.79□□□□□ -1.96
PROM1O43490 AIMP1P2-201ENST00000425294 312 ntBASIC2.79□□□□□ -1.96
PROM1O43490 Z98742.2-201ENST00000431564 187 ntBASIC2.79□□□□□ -1.96
PROM1O43490 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.79□□□□□ -1.96
PROM1O43490 snoU13.14-201ENST00000459372 104 ntBASIC2.79□□□□□ -1.96
PROM1O43490 AC145146.1-201ENST00000496370 254 ntBASIC2.79□□□□□ -1.96
PROM1O43490 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC2.79□□□□□ -1.96
PROM1O43490 RNU4-71P-201ENST00000516258 113 ntBASIC2.79□□□□□ -1.96
PROM1O43490 AC018448.1-201ENST00000552843 316 ntBASIC2.79□□□□□ -1.96
PROM1O43490 AC130289.1-201ENST00000577321 73 ntBASIC2.79□□□□□ -1.96
PROM1O43490 MIR4423-201ENST00000580922 80 ntBASIC2.79□□□□□ -1.96
PROM1O43490 AC090616.3-201ENST00000582184 217 ntBASIC2.79□□□□□ -1.96
PROM1O43490 AL356575.1-201ENST00000603008 283 ntBASIC2.79□□□□□ -1.96
PROM1O43490 AC005520.5-201ENST00000613926 164 ntBASIC2.79□□□□□ -1.96
PROM1O43490 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC2.79□□□□□ -1.96
PROM1O43490 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.79□□□□□ -1.96
PROM1O43490 AC096644.4-201ENST00000563417 2912 ntBASIC2.79□□□□□ -1.96
PROM1O43490 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.78□□□□□ -1.96
PROM1O43490 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
PROM1O43490 Y_RNA.44-201ENST00000362676 108 ntBASIC2.78□□□□□ -1.96
PROM1O43490 RNU6-326P-201ENST00000365480 107 ntBASIC2.78□□□□□ -1.96
PROM1O43490 RNU6-1083P-201ENST00000384022 107 ntBASIC2.78□□□□□ -1.96
PROM1O43490 RNU2-14P-201ENST00000411053 191 ntBASIC2.78□□□□□ -1.96
PROM1O43490 RNU2-64P-201ENST00000411315 191 ntBASIC2.78□□□□□ -1.96
PROM1O43490 RPL23AP36-201ENST00000413895 458 ntBASIC2.78□□□□□ -1.96
PROM1O43490 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.78□□□□□ -1.96
PROM1O43490 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC2.78□□□□□ -1.96
PROM1O43490 AC027124.2-201ENST00000428249 105 ntBASIC2.78□□□□□ -1.96
PROM1O43490 POLR2KP2-201ENST00000438155 177 ntBASIC2.78□□□□□ -1.96
PROM1O43490 AL445687.1-201ENST00000439946 251 ntBASIC2.78□□□□□ -1.96
PROM1O43490 IFNA11P-201ENST00000446352 526 ntBASIC2.78□□□□□ -1.96
PROM1O43490 AC007395.1-201ENST00000451333 677 ntBASIC2.78□□□□□ -1.96
PROM1O43490 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC2.78□□□□□ -1.96
PROM1O43490 AL121594.1-201ENST00000475906 575 ntBASIC2.78□□□□□ -1.96
PROM1O43490 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.78□□□□□ -1.96
PROM1O43490 CYCSP23-201ENST00000519781 313 ntBASIC2.78□□□□□ -1.96
PROM1O43490 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.78□□□□□ -1.96
PROM1O43490 AC104984.5-201ENST00000586878 94 ntBASIC2.78□□□□□ -1.96
PROM1O43490 AC008749.1-201ENST00000597650 306 ntBASIC2.78□□□□□ -1.96
PROM1O43490 AL670379.2-201ENST00000604983 252 ntBASIC2.78□□□□□ -1.96
PROM1O43490 uc_338.14-201ENST00000613162 166 ntBASIC2.78□□□□□ -1.96
PROM1O43490 PCGEM1.1-201ENST00000613431 131 ntBASIC2.78□□□□□ -1.96
PROM1O43490 AC127459.3-201ENST00000624328 466 ntBASIC2.78□□□□□ -1.96
PROM1O43490 MIR6733-201ENST00000635723 61 ntBASIC2.78□□□□□ -1.96
PROM1O43490 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
PROM1O43490 RNU4-15P-201ENST00000362613 141 ntBASIC2.77□□□□□ -1.97
PROM1O43490 U3.9-201ENST00000363823 204 ntBASIC2.77□□□□□ -1.97
PROM1O43490 Y_RNA.297-201ENST00000364950 91 ntBASIC2.77□□□□□ -1.97
PROM1O43490 RNA5SP201-201ENST00000410316 124 ntBASIC2.77□□□□□ -1.97
PROM1O43490 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.77□□□□□ -1.97
PROM1O43490 MRPS10P1-201ENST00000448483 130 ntBASIC2.77□□□□□ -1.97
PROM1O43490 AC074133.1-201ENST00000515696 183 ntBASIC2.77□□□□□ -1.97
PROM1O43490 RNU6-107P-201ENST00000516643 102 ntBASIC2.77□□□□□ -1.97
PROM1O43490 HSPE1P18-201ENST00000517602 280 ntBASIC2.77□□□□□ -1.97
PROM1O43490 AC109329.2-201ENST00000519658 482 ntBASIC2.77□□□□□ -1.97
PROM1O43490 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.77□□□□□ -1.97
PROM1O43490 EIF4A1P12-201ENST00000551910 141 ntBASIC2.77□□□□□ -1.97
PROM1O43490 AC027176.1-201ENST00000560204 514 ntBASIC2.77□□□□□ -1.97
PROM1O43490 AC233702.2-202ENST00000562547 291 ntBASIC2.77□□□□□ -1.97
PROM1O43490 MIR3117-201ENST00000584034 78 ntBASIC2.77□□□□□ -1.97
PROM1O43490 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC2.77□□□□□ -1.97
PROM1O43490 AC023043.3-201ENST00000593113 385 ntBASIC2.77□□□□□ -1.97
PROM1O43490 AC013412.1-201ENST00000610687 192 ntBASIC2.77□□□□□ -1.97
PROM1O43490 AL449363.1-201ENST00000617815 186 ntBASIC2.77□□□□□ -1.97
PROM1O43490 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.77□□□□□ -1.97
PROM1O43490 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.77□□□□□ -1.97
PROM1O43490 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
PROM1O43490 AL109809.4-201ENST00000603520 2185 ntBASIC2.77□□□□□ -1.97
PROM1O43490 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.77□□□□□ -1.97
PROM1O43490 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
PROM1O43490 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC2.77□□□□□ -1.97
PROM1O43490 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
PROM1O43490 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 189.1 ms