Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 Y_RNA.48-201ENST00000362710 103 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 SNORD115-32-201ENST00000364079 82 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 RNU6-601P-201ENST00000384540 107 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 MIR32-201ENST00000384965 70 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 MIR597-201ENST00000384968 97 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 SNORA26.9-201ENST00000391322 122 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 AL356432.1-201ENST00000405809 419 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 Y_RNA.594-201ENST00000410373 140 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 AC123900.1-201ENST00000420390 96 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 MTCO3P8-201ENST00000453691 755 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 AC016925.1-201ENST00000458303 298 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 RPS23P5-201ENST00000495419 428 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 HMGN1P12-201ENST00000499125 195 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 Y_RNA.670-201ENST00000516255 105 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 Y_RNA.691-201ENST00000516611 103 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 RNU2-44P-201ENST00000516795 194 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 AC087441.2-201ENST00000529141 262 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 ANP32BP3-201ENST00000559213 706 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 AC005668.1-201ENST00000571142 476 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 RMST_6.1-201ENST00000611980 203 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 AC137590.2-201ENST00000619709 240 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 U1.36-201ENST00000620684 176 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.99□□□□□ -2.09
CPSF3Q9UKF6 RNU1-58P-201ENST00000362413 163 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 RNU6-593P-201ENST00000364716 112 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 SNORD31B-201ENST00000364977 69 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 RPL37P10-201ENST00000412884 288 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 AC004386.2-201ENST00000441858 148 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 RPL23AP42-201ENST00000471152 471 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 CBX3P8-201ENST00000532412 525 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 AC026470.2-201ENST00000561492 181 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 TCL6_2.1-201ENST00000615162 119 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 AL590240.4-201ENST00000616908 390 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 TPTEP1-208ENST00000636884 213 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 ZNF299P-201ENST00000406845 1804 ntBASIC1.98□□□□□ -2.09
CPSF3Q9UKF6 RNU6-545P-201ENST00000362681 104 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 RNU6-595P-201ENST00000363944 107 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 RNU6-160P-201ENST00000384591 107 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 RNU6-1050P-201ENST00000410388 107 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 RNU4-14P-201ENST00000410858 122 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 AC098614.3-201ENST00000438957 440 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 snoU13.30-201ENST00000458951 104 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 AP005660.1-201ENST00000522972 293 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 AC027288.2-201ENST00000553028 243 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 MIR3935-201ENST00000583472 104 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 AC009229.3-201ENST00000608056 282 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 LINC02555-201ENST00000563933 1951 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 BX322639.1-202ENST00000423987 2213 ntBASIC1.97□□□□□ -2.09
CPSF3Q9UKF6 ZNF204P-201ENST00000416749 2397 ntBASIC1.96□□□□□ -2.09
CPSF3Q9UKF6 SNORD115-8-201ENST00000363856 82 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 RNA5SP493-201ENST00000364115 91 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 SNORA16.1-201ENST00000364597 132 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.303-201ENST00000364998 94 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 SNORD115-38-201ENST00000365037 82 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 RNU6-438P-201ENST00000365561 103 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.482-201ENST00000384377 111 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 MIR676-201ENST00000390702 67 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 MIR764-201ENST00000390811 85 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 RNU11-3P-201ENST00000391111 133 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 SUMO2P12-201ENST00000405924 140 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 CYCSP49-201ENST00000420810 319 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 AC139712.2-201ENST00000424302 339 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 HMGN2P19-201ENST00000425149 265 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 MTCO3P29-201ENST00000432119 779 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 MTND3P10-201ENST00000450967 341 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 AC022254.1-201ENST00000567857 235 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 MIR3169-201ENST00000578032 83 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 MIR5006-201ENST00000583027 110 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 MIR6715A-201ENST00000615929 79 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 MIR7843-201ENST00000622274 79 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.96□□□□□ -2.1
CPSF3Q9UKF6 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.319-201ENST00000365138 92 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 AL354864.1-201ENST00000373226 539 ntTSL 2 BASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 Y_RNA.404-201ENST00000383978 102 ntBASIC1.95□□□□□ -2.1
CPSF3Q9UKF6 RNU6-17P-201ENST00000384245 107 ntBASIC1.95□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 173.9 ms