Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 AC002984.1-201ENST00000591692 448 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.15-201ENST00000611544 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.16-201ENST00000613119 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.12-201ENST00000613778 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.20-201ENST00000613956 192 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.9-201ENST00000615427 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.11-201ENST00000616345 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.2-201ENST00000616535 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.3-201ENST00000617785 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.19-201ENST00000618602 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 RNU2-1-201ENST00000618664 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.6-201ENST00000619225 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.5-201ENST00000619465 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 U2.10-201ENST00000620268 191 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 CENPCP1-201ENST00000533085 2578 ntBASIC2.05□□□□□ -2.08
VPS28Q9UK41 SKIL-202ENST00000413427 2702 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
VPS28Q9UK41 RNU6-1059P-201ENST00000363752 98 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 RNU6-593P-201ENST00000364716 112 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.04□□□□□ -2.08
VPS28Q9UK41 Y_RNA.533-201ENST00000384596 114 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 RNU6-541P-201ENST00000384709 110 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC2.04□□□□□ -2.08
VPS28Q9UK41 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.04□□□□□ -2.08
VPS28Q9UK41 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.04□□□□□ -2.08
VPS28Q9UK41 RN7SKP210-201ENST00000459176 261 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 HMGN2P9-201ENST00000476875 229 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 RPL30P10-201ENST00000488148 337 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.04□□□□□ -2.08
VPS28Q9UK41 RNU6-948P-201ENST00000516374 107 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 RNU6-1016P-201ENST00000516689 94 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 RNU6-58P-201ENST00000517143 103 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
VPS28Q9UK41 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC2.04□□□□□ -2.08
VPS28Q9UK41 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.04□□□□□ -2.08
VPS28Q9UK41 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.04□□□□□ -2.08
VPS28Q9UK41 AL158827.2-201ENST00000602494 330 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.04□□□□□ -2.08
VPS28Q9UK41 AL133216.2-202ENST00000634512 349 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 AL691447.3-201ENST00000635020 330 ntBASIC2.04□□□□□ -2.08
VPS28Q9UK41 RNU6-1305P-201ENST00000364353 104 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 Y_RNA.248-201ENST00000364501 109 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.03□□□□□ -2.08
VPS28Q9UK41 RNU6-17P-201ENST00000384245 107 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 RNU6-975P-201ENST00000384296 105 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 RNU6-18P-201ENST00000384527 107 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 RNU6-1235P-201ENST00000384559 107 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 MIR548K-201ENST00000408406 116 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 RNA5SP100-201ENST00000410903 110 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 RNA5SP59-201ENST00000410922 110 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 AC074085.1-201ENST00000413598 418 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS28Q9UK41 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC2.03□□□□□ -2.08
VPS28Q9UK41 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.03□□□□□ -2.08
VPS28Q9UK41 HMGB1P18-201ENST00000438801 619 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 RNU6-498P-201ENST00000459468 107 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 AC046134.1-201ENST00000514454 666 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 RNU7-175P-201ENST00000515915 61 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 AL590705.4-201ENST00000532209 134 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 AC027288.2-201ENST00000553028 243 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 SUB1P4-201ENST00000566062 339 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 AC008873.1-201ENST00000625051 138 ntBASIC2.03□□□□□ -2.08
VPS28Q9UK41 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.03□□□□□ -2.09
VPS28Q9UK41 CASC19-280ENST00000642102 1351 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 RNU6-595P-201ENST00000363944 107 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 AC019129.1-201ENST00000403786 261 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 MIR548F5-201ENST00000408421 86 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.02□□□□□ -2.09
VPS28Q9UK41 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.02□□□□□ -2.09
VPS28Q9UK41 AC107399.1-201ENST00000451226 265 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC2.02□□□□□ -2.09
VPS28Q9UK41 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.02□□□□□ -2.09
VPS28Q9UK41 AC134698.4-201ENST00000523451 826 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 MIR5094-201ENST00000578766 85 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 AC010900.2-201ENST00000604508 210 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 AC018462.2-201ENST00000605375 395 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 SNORD11B-201ENST00000607707 90 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 MIR6715A-201ENST00000615929 79 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 AL078596.1-201ENST00000624856 447 ntBASIC2.02□□□□□ -2.09
VPS28Q9UK41 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.02□□□□□ -2.09
VPS28Q9UK41 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
VPS28Q9UK41 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC2.01□□□□□ -2.09
VPS28Q9UK41 RNU5F-3P-201ENST00000363767 117 ntBASIC2.01□□□□□ -2.09
VPS28Q9UK41 RNU6-842P-201ENST00000384269 107 ntBASIC2.01□□□□□ -2.09
VPS28Q9UK41 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
VPS28Q9UK41 MIR1289-2-201ENST00000408360 111 ntBASIC2.01□□□□□ -2.09
VPS28Q9UK41 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.01□□□□□ -2.09
VPS28Q9UK41 USMG5P1-201ENST00000425964 177 ntBASIC2.01□□□□□ -2.09
VPS28Q9UK41 RPS3AP52-201ENST00000435639 297 ntBASIC2.01□□□□□ -2.09
VPS28Q9UK41 SNORA25.14-201ENST00000516481 132 ntBASIC2.01□□□□□ -2.09
VPS28Q9UK41 AC005668.1-201ENST00000571142 476 ntBASIC2.01□□□□□ -2.09
VPS28Q9UK41 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS28Q9UK41 MIR5089-201ENST00000580047 84 ntBASIC2.01□□□□□ -2.09
VPS28Q9UK41 AC069114.2-201ENST00000604699 304 ntBASIC2.01□□□□□ -2.09
VPS28Q9UK41 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS28Q9UK41 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.01□□□□□ -2.09
VPS28Q9UK41 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.01□□□□□ -2.09
VPS28Q9UK41 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 143.4 ms