Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 TOMM22P2-201ENST00000430735 237 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 AC074290.1-201ENST00000448883 135 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 SUMO1P2-201ENST00000452524 304 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 RPL27AP5-201ENST00000469428 449 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 RN7SL20P-201ENST00000488827 297 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 SCARNA17.1-201ENST00000516211 143 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 SCARNA17.2-201ENST00000516334 143 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.74□□□□□ -1.97
VSX1Q9NZR4 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC2.74□□□□□ -1.97
VSX1Q9NZR4 SCARNA17.4-201ENST00000614296 143 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC2.74□□□□□ -1.97
VSX1Q9NZR4 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VSX1Q9NZR4 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC2.74□□□□□ -1.97
VSX1Q9NZR4 AC009487.2-201ENST00000420969 6821 ntBASIC2.74□□□□□ -1.97
VSX1Q9NZR4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC2.74□□□□□ -1.97
VSX1Q9NZR4 Y_RNA.16-201ENST00000362421 102 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 VTRNA1-1-201ENST00000363120 99 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 SNORD27-201ENST00000363981 72 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 SNORA18.2-201ENST00000383865 132 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 Y_RNA.785-201ENST00000384290 109 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 RNU6-102P-201ENST00000384485 104 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.73□□□□□ -1.97
VSX1Q9NZR4 RNU2-54P-201ENST00000410299 190 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 RNU2-64P-201ENST00000411315 191 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 AC005326.1-201ENST00000429197 123 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 CYP2C59P-201ENST00000457790 269 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 SRIP1-201ENST00000489235 288 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC2.73□□□□□ -1.97
VSX1Q9NZR4 HMGB3P17-201ENST00000504195 649 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 SCARNA24.2-201ENST00000516968 130 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.73□□□□□ -1.97
VSX1Q9NZR4 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.73□□□□□ -1.97
VSX1Q9NZR4 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.73□□□□□ -1.97
VSX1Q9NZR4 AC018630.3-201ENST00000542637 96 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 AC010620.2-201ENST00000600135 313 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 AC004467.1-201ENST00000615678 330 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 MIR5739-201ENST00000619803 80 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 MIR6075-201ENST00000620782 95 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 AC008873.1-201ENST00000625051 138 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
VSX1Q9NZR4 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.73□□□□□ -1.97
VSX1Q9NZR4 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.73□□□□□ -1.97
VSX1Q9NZR4 AC009487.4-201ENST00000624969 3585 ntBASIC2.73□□□□□ -1.97
VSX1Q9NZR4 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.73□□□□□ -1.97
VSX1Q9NZR4 AC000403.1-201ENST00000613696 3585 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 AC092593.1-201ENST00000515413 1815 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 AC073325.2-201ENST00000339545 159 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 UBE2WP1-201ENST00000362030 340 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 Y_RNA.54-201ENST00000362766 105 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 RNU6-338P-201ENST00000383888 105 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 RNU6-1026P-201ENST00000384465 108 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 Y_RNA.539-201ENST00000384635 107 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 MIR586-201ENST00000385035 97 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC2.72□□□□□ -1.97
VSX1Q9NZR4 RNU4-30P-201ENST00000410245 143 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC2.72□□□□□ -1.97
VSX1Q9NZR4 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.72□□□□□ -1.97
VSX1Q9NZR4 AC006028.1-201ENST00000438379 402 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC2.72□□□□□ -1.97
VSX1Q9NZR4 PRSS3P4-201ENST00000453323 162 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 COX6CP14-201ENST00000469580 174 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC2.72□□□□□ -1.97
VSX1Q9NZR4 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 SNORA27.4-201ENST00000516650 95 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 MIR5680-201ENST00000577577 84 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 MIR3616-201ENST00000584070 92 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 AC069294.1-201ENST00000608397 350 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 MIR7112-201ENST00000616126 65 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 IGHVIII-44-202ENST00000636235 289 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 MIR7515-201ENST00000637837 67 ntBASIC2.72□□□□□ -1.97
VSX1Q9NZR4 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.72□□□□□ -1.97
VSX1Q9NZR4 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.72□□□□□ -1.97
VSX1Q9NZR4 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.71□□□□□ -1.97
VSX1Q9NZR4 MCF2-204ENST00000414978 3813 ntAPPRIS ALT2 TSL 5 BASIC2.71□□□□□ -1.98
VSX1Q9NZR4 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC2.71□□□□□ -1.98
VSX1Q9NZR4 MIR208A-201ENST00000362287 71 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 RNU6-727P-201ENST00000363592 107 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 RNA5SP267-201ENST00000364893 126 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.383-201ENST00000383855 97 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 SNORD21-201ENST00000383953 95 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 Y_RNA.446-201ENST00000384178 104 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 SNORD67-201ENST00000390833 111 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 HMGN2P35-201ENST00000412164 270 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 AC009963.1-201ENST00000417265 157 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 AL731684.2-201ENST00000426839 333 ntTSL 5 BASIC2.71□□□□□ -1.98
VSX1Q9NZR4 BX510359.1-201ENST00000456973 237 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 AC114982.1-201ENST00000469402 321 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 RN7SL633P-201ENST00000488974 297 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 AC083906.5-201ENST00000503722 328 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 RNU6-182P-201ENST00000516970 105 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 RNU6-586P-201ENST00000517265 104 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 UBL5P2-201ENST00000583788 219 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.71□□□□□ -1.98
VSX1Q9NZR4 AL512605.2-201ENST00000592972 256 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 AL162424.1-201ENST00000602325 221 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.71□□□□□ -1.98
VSX1Q9NZR4 AC090517.3-201ENST00000625170 141 ntBASIC2.71□□□□□ -1.98
VSX1Q9NZR4 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.71□□□□□ -1.98
VSX1Q9NZR4 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.71□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms