Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-254P-201ENST00000363377 107 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 Y_RNA.151-201ENST00000363566 112 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-414P-201ENST00000363705 104 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 RNU4-75P-201ENST00000364621 146 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 U8.10-201ENST00000384260 133 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 ARL5AP1-201ENST00000418991 388 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 Z82205.1-201ENST00000428456 297 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 C8orf59P1-201ENST00000429930 303 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 TOMM22P2-201ENST00000430735 237 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 AL135790.2-201ENST00000437701 267 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 JTBP1-201ENST00000441314 247 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 MTND2P22-201ENST00000444325 1033 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 snoU13.23-201ENST00000458863 104 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 AC019235.1-201ENST00000503847 207 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 AC011406.1-201ENST00000512440 370 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-1281P-201ENST00000516223 105 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 RNU6-856P-201ENST00000516959 98 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 MTND1P35-201ENST00000526739 508 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 AC026371.1-201ENST00000551867 419 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 DNAJC19P9-201ENST00000555084 351 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 MIR4753-201ENST00000585119 83 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 MIR8076-201ENST00000611401 83 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 TCL6_2.1-201ENST00000615162 119 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 MIR8063-201ENST00000621930 81 ntBASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.09□□□□□ -2.23
EXOSC4Q9NPD3 AC100821.1-201ENST00000523153 2479 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 Y_RNA.38-201ENST00000362617 102 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 Y_RNA.41-201ENST00000362646 102 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 SNORA33-201ENST00000363664 130 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 SNORD113-7-201ENST00000363762 77 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 MIR520A-201ENST00000384862 85 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 MIR764-201ENST00000390811 85 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 DLGAP5P1-201ENST00000430307 464 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 ERLEC1P1-201ENST00000433806 578 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 AC027119.1-201ENST00000440877 241 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 RPL23AP75-201ENST00000491601 451 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 MTCO1P29-201ENST00000496868 288 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 AC067942.3-201ENST00000512025 362 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 AC016256.1-201ENST00000547971 354 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 AC069114.2-201ENST00000604699 304 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 AC004492.1-201ENST00000607036 742 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 BX322639.1-202ENST00000423987 2213 ntBASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.08□□□□□ -2.24
EXOSC4Q9NPD3 ICE2P2-201ENST00000483823 2787 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 RNU6-1305P-201ENST00000364353 104 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 RNU6-1019P-201ENST00000364424 107 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 RNU6-933P-201ENST00000384424 107 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 Y_RNA.559-201ENST00000384686 107 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 RNU6-331P-201ENST00000384724 107 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 MIR300-201ENST00000401138 83 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 AL590632.1-201ENST00000424289 371 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 NFU1P2-201ENST00000448700 469 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 OR2AQ1P-201ENST00000451972 200 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 RPS29P29-201ENST00000456396 171 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 RN7SKP210-201ENST00000459176 261 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 Y_RNA.665-201ENST00000516177 98 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 ZNF519P2-201ENST00000557032 169 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 AC019288.1-201ENST00000557918 224 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 AC100830.2-201ENST00000581636 240 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 NBR2-204ENST00000587322 63 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 AF250324.2-201ENST00000608299 610 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 RNU6ATAC35P-201ENST00000609276 444 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 AL078604.3-201ENST00000615580 211 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 AL121890.5-201ENST00000620848 304 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 AC068137.3-201ENST00000639191 341 ntBASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.07□□□□□ -2.24
EXOSC4Q9NPD3 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 ZNF204P-201ENST00000416749 2397 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 AC121333.1-201ENST00000567488 2709 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 SNORD50.1-201ENST00000362987 71 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 SNORA4.2-201ENST00000365313 147 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 RNU6-975P-201ENST00000384296 105 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 RNU6-784P-201ENST00000384330 106 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 RNU6-939P-201ENST00000384634 107 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 RNA5SP213-201ENST00000391031 106 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 SNORA40.6-201ENST00000391153 128 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 AL590002.1-201ENST00000406554 418 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 RNU6-908P-201ENST00000410160 94 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 RNU2-16P-201ENST00000410712 136 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 MTCO1P21-201ENST00000416634 589 ntBASIC1.06□□□□□ -2.24
EXOSC4Q9NPD3 AL445305.1-201ENST00000432577 575 ntBASIC1.06□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 178 ms