Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.06□□□□□ -2.08
USP28Q96RU2 MTCO2P12-201ENST00000427426 682 ntBASIC2.06□□□□□ -2.08
USP28Q96RU2 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC2.06□□□□□ -2.08
USP28Q96RU2 AL445305.1-201ENST00000432577 575 ntBASIC2.06□□□□□ -2.08
USP28Q96RU2 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC2.06□□□□□ -2.08
USP28Q96RU2 Y_RNA.639-201ENST00000458981 102 ntBASIC2.06□□□□□ -2.08
USP28Q96RU2 AC087477.1-201ENST00000465747 340 ntBASIC2.06□□□□□ -2.08
USP28Q96RU2 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.06□□□□□ -2.08
USP28Q96RU2 AC090971.5-201ENST00000621102 293 ntBASIC2.06□□□□□ -2.08
USP28Q96RU2 uc_338.22-201ENST00000622722 187 ntBASIC2.06□□□□□ -2.08
USP28Q96RU2 AC090517.3-201ENST00000625170 141 ntBASIC2.06□□□□□ -2.08
USP28Q96RU2 AP000560.1-201ENST00000624150 1937 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.05□□□□□ -2.08
USP28Q96RU2 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC2.05□□□□□ -2.08
USP28Q96RU2 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.05□□□□□ -2.08
USP28Q96RU2 AC008555.8-201ENST00000623602 2168 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 AC092268.1-201ENST00000342691 405 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 Y_RNA.405-201ENST00000383979 100 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 Y_RNA.431-201ENST00000384086 102 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 Y_RNA.451-201ENST00000384200 100 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 U8.10-201ENST00000384260 133 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 RNU6-378P-201ENST00000384324 107 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 Y_RNA.524-201ENST00000384564 100 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 Y_RNA.561-201ENST00000384694 100 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 MIR32-201ENST00000384965 70 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 CBX3P9-201ENST00000402326 552 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 AL512604.1-201ENST00000404812 257 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 RN7SKP192-201ENST00000411291 327 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC2.05□□□□□ -2.08
USP28Q96RU2 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC2.05□□□□□ -2.08
USP28Q96RU2 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC2.05□□□□□ -2.08
USP28Q96RU2 RPL17P19-201ENST00000489069 552 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 AC107393.1-201ENST00000512403 346 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 RNA5SP137-201ENST00000516833 135 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.05□□□□□ -2.08
USP28Q96RU2 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.05□□□□□ -2.08
USP28Q96RU2 AL355802.3-201ENST00000607571 545 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.05□□□□□ -2.08
USP28Q96RU2 AC091932.3-201ENST00000624223 323 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 SCARNA4-201ENST00000629045 128 ntBASIC2.05□□□□□ -2.08
USP28Q96RU2 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.05□□□□□ -2.08
USP28Q96RU2 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.05□□□□□ -2.08
USP28Q96RU2 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.04□□□□□ -2.08
USP28Q96RU2 RNU6-222P-201ENST00000362438 107 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 Y_RNA.197-201ENST00000364004 102 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 RNU6-944P-201ENST00000364023 107 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 RNU4-76P-201ENST00000364509 141 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 SNORA12.2-201ENST00000391040 156 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 AC012306.1-201ENST00000423267 114 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 CHEK2P4-201ENST00000450340 246 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 AC145146.1-201ENST00000496370 254 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 AC115990.1-201ENST00000526957 301 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 AL590705.4-201ENST00000532209 134 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.04□□□□□ -2.08
USP28Q96RU2 AC021231.3-201ENST00000558497 370 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 AC020661.2-201ENST00000560114 134 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 AC005899.2-201ENST00000584353 90 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.04□□□□□ -2.08
USP28Q96RU2 AL627230.6-201ENST00000611129 280 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 AC133104.2-201ENST00000615272 193 ntBASIC2.04□□□□□ -2.08
USP28Q96RU2 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
USP28Q96RU2 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.04□□□□□ -2.08
USP28Q96RU2 Y_RNA.395-201ENST00000383945 109 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 Y_RNA.500-201ENST00000384466 111 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 RNU6-1274P-201ENST00000384557 107 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
USP28Q96RU2 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.03□□□□□ -2.08
USP28Q96RU2 MIR1294-201ENST00000408503 142 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 RNA5SP201-201ENST00000410316 124 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.03□□□□□ -2.08
USP28Q96RU2 AL445685.2-201ENST00000422551 342 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 PMCHL1-202ENST00000423102 261 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 AC096644.2-201ENST00000429278 159 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 AC092423.1-201ENST00000430165 186 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 AL161788.1-201ENST00000441805 169 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 MTCYBP6-201ENST00000441810 138 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 AL137792.2-201ENST00000443484 235 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.03□□□□□ -2.08
USP28Q96RU2 U8.22-201ENST00000459141 133 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 RPS29P21-201ENST00000496272 170 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.03□□□□□ -2.08
USP28Q96RU2 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.03□□□□□ -2.08
USP28Q96RU2 RNU6-1170P-201ENST00000515974 106 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.03□□□□□ -2.08
USP28Q96RU2 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC2.03□□□□□ -2.08
USP28Q96RU2 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.03□□□□□ -2.08
USP28Q96RU2 AC004584.2-201ENST00000570407 410 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 MIR3136-201ENST00000583498 78 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 AC007485.1-201ENST00000616755 206 ntBASIC2.03□□□□□ -2.08
USP28Q96RU2 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
USP28Q96RU2 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.02□□□□□ -2.09
USP28Q96RU2 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC2.02□□□□□ -2.09
USP28Q96RU2 ZNF72P-201ENST00000425869 1908 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 RNU6-1159P-201ENST00000362933 107 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 RNU4-9P-201ENST00000364951 139 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 RNU6-142P-201ENST00000384019 107 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 Y_RNA.445-201ENST00000384168 102 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 MIR676-201ENST00000390702 67 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 MIR208B-201ENST00000401172 77 ntBASIC2.02□□□□□ -2.09
USP28Q96RU2 RNU6-1156P-201ENST00000410365 100 ntBASIC2.02□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms