Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.26□□□□□ -2.21
LINC00477Q96M19 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.26□□□□□ -2.21
LINC00477Q96M19 AC233981.2-201ENST00000611524 1614 ntBASIC1.26□□□□□ -2.21
LINC00477Q96M19 AP000648.3-201ENST00000623539 4507 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
LINC00477Q96M19 U3.9-201ENST00000363823 204 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 Y_RNA.332-201ENST00000365271 113 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 RNU6-767P-201ENST00000384132 107 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 RNY3P14-201ENST00000384309 102 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 SNORD14D-201ENST00000384390 87 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 FGF7P8-201ENST00000402994 292 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 RN7SKP51-201ENST00000410781 304 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 CBX3P6-201ENST00000430257 527 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 AL035666.1-201ENST00000446195 348 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 AC016717.1-201ENST00000448918 286 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 SNORD5.1-201ENST00000458800 75 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 U8.22-201ENST00000459141 133 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 AC010531.2-201ENST00000465012 153 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 RNA5SP490-201ENST00000517141 136 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 AC027288.2-201ENST00000553028 243 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 MIR3169-201ENST00000578032 83 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 AC018462.2-201ENST00000605375 395 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 MIR502-201ENST00000606349 86 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 AC009229.3-201ENST00000608056 282 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.25□□□□□ -2.21
LINC00477Q96M19 SCARNA4-201ENST00000629045 128 ntBASIC1.25□□□□□ -2.21
LINC00477Q96M19 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
LINC00477Q96M19 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.25□□□□□ -2.21
LINC00477Q96M19 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.25□□□□□ -2.21
LINC00477Q96M19 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
LINC00477Q96M19 MTND5P9-201ENST00000503854 1755 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 RNU1-76P-201ENST00000362903 159 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 SNORA33-201ENST00000363664 130 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 RNA5SP493-201ENST00000364115 91 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 RNA5SP126-201ENST00000365092 109 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 RNU6-338P-201ENST00000383888 105 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 RNU6-418P-201ENST00000384035 107 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 MIR32-201ENST00000384965 70 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC009161.1-201ENST00000417306 376 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 RPL21P111-201ENST00000418453 477 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC139712.2-201ENST00000424302 339 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AL353997.1-201ENST00000432936 108 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 MTND4LP16-201ENST00000440828 295 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC004386.2-201ENST00000441858 148 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 MTCO1P44-201ENST00000441935 243 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AL353572.1-201ENST00000442490 417 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.24□□□□□ -2.21
LINC00477Q96M19 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.24□□□□□ -2.21
LINC00477Q96M19 AL513124.1-201ENST00000450410 614 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 OR2AQ1P-201ENST00000451972 200 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.24□□□□□ -2.21
LINC00477Q96M19 RNU7-14P-201ENST00000459331 62 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC116337.1-201ENST00000509680 687 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 RNU6-277P-201ENST00000516272 106 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.24□□□□□ -2.21
LINC00477Q96M19 AL356157.2-201ENST00000605122 111 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC016727.1-205ENST00000605437 569 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC093913.1-201ENST00000614178 329 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC022306.2-201ENST00000617563 647 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC084768.2-201ENST00000622736 221 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 AC099654.14-201ENST00000638599 341 ntBASIC1.24□□□□□ -2.21
LINC00477Q96M19 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.24□□□□□ -2.21
LINC00477Q96M19 ZNF204P-201ENST00000416749 2397 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 SNORA67.2-201ENST00000384300 149 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 RNU6-933P-201ENST00000384424 107 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 RNU6-1050P-201ENST00000410388 107 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 RNA5SP501-201ENST00000410990 112 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 RN7SKP284-201ENST00000411002 343 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 DAP3P1-201ENST00000441522 278 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.23□□□□□ -2.21
LINC00477Q96M19 AC091951.2-201ENST00000500762 203 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.23□□□□□ -2.21
LINC00477Q96M19 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.23□□□□□ -2.21
LINC00477Q96M19 MIR4513-201ENST00000581077 86 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 AP000654.2-201ENST00000605633 586 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 AL355802.3-201ENST00000607571 545 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 AL355073.2-201ENST00000612106 557 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 TPTEP1-208ENST00000636884 213 ntBASIC1.23□□□□□ -2.21
LINC00477Q96M19 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
LINC00477Q96M19 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.22□□□□□ -2.21
LINC00477Q96M19 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.22□□□□□ -2.21
LINC00477Q96M19 LINC02555-201ENST00000563933 1951 ntBASIC1.22□□□□□ -2.21
LINC00477Q96M19 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.22□□□□□ -2.21
LINC00477Q96M19 SNORD114-1-201ENST00000362705 72 ntBASIC1.22□□□□□ -2.21
LINC00477Q96M19 Y_RNA.72-201ENST00000362894 103 ntBASIC1.22□□□□□ -2.21
LINC00477Q96M19 SNORD87-201ENST00000364849 89 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 122.9 ms