Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 AC002553.4-201ENST00000616896 331 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 AC009033.1-201ENST00000624279 431 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 MTND5P9-201ENST00000503854 1755 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
VPS39Q96JC1 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.61□□□□□ -2.15
VPS39Q96JC1 AP000648.3-201ENST00000623539 4507 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.6□□□□□ -2.15
VPS39Q96JC1 Y_RNA.86-201ENST00000363020 111 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 RNU6-784P-201ENST00000384330 106 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 Y_RNA.473-201ENST00000384333 102 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.6□□□□□ -2.15
VPS39Q96JC1 Y_RNA.599-201ENST00000410489 109 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 RNU6-373P-201ENST00000411247 98 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 FCF1P9-201ENST00000412546 282 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 AC139712.2-201ENST00000424302 339 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 AL445305.1-201ENST00000432577 575 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 MTND1P34-201ENST00000438556 671 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 AC079354.2-201ENST00000453523 154 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 RPL23AP75-201ENST00000491601 451 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.6□□□□□ -2.15
VPS39Q96JC1 RNU6-864P-201ENST00000516256 108 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 RNU5F-4P-201ENST00000516581 114 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.6□□□□□ -2.15
VPS39Q96JC1 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.6□□□□□ -2.15
VPS39Q96JC1 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.6□□□□□ -2.15
VPS39Q96JC1 MIR4255-201ENST00000579351 72 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 FGF7P1-201ENST00000582820 288 ntBASIC1.6□□□□□ -2.15
VPS39Q96JC1 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.59□□□□□ -2.15
VPS39Q96JC1 Y_RNA.301-201ENST00000364990 103 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 Y_RNA.573-201ENST00000384763 105 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 MIR1277-201ENST00000408536 78 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 MIR1267-201ENST00000408723 78 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 Y_RNA.619-201ENST00000410951 90 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.59□□□□□ -2.15
VPS39Q96JC1 RPL21P111-201ENST00000418453 477 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.59□□□□□ -2.15
VPS39Q96JC1 AL353572.1-201ENST00000442490 417 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS39Q96JC1 MTCO2P30-201ENST00000503662 364 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 SNORA25.15-201ENST00000516487 89 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 RNU6-567P-201ENST00000516746 107 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 SUMO2P18-201ENST00000518873 252 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.59□□□□□ -2.15
VPS39Q96JC1 AC104984.5-201ENST00000586878 94 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.59□□□□□ -2.15
VPS39Q96JC1 AC019193.3-201ENST00000609144 554 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 uc_338.5-201ENST00000611839 155 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 MIR6715A-201ENST00000615929 79 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 AC006504.8-201ENST00000621046 635 ntBASIC1.59□□□□□ -2.15
VPS39Q96JC1 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
VPS39Q96JC1 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.59□□□□□ -2.16
VPS39Q96JC1 AC006026.1-201ENST00000444025 1803 ntBASIC1.59□□□□□ -2.16
VPS39Q96JC1 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
VPS39Q96JC1 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
VPS39Q96JC1 Y_RNA.48-201ENST00000362710 103 ntBASIC1.58□□□□□ -2.16
VPS39Q96JC1 AL627390.1-201ENST00000396055 340 ntBASIC1.58□□□□□ -2.16
VPS39Q96JC1 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.58□□□□□ -2.16
VPS39Q96JC1 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS39Q96JC1 HSPE1P24-201ENST00000450782 238 ntBASIC1.58□□□□□ -2.16
VPS39Q96JC1 MTCO3P8-201ENST00000453691 755 ntBASIC1.58□□□□□ -2.16
VPS39Q96JC1 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.58□□□□□ -2.16
VPS39Q96JC1 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.58□□□□□ -2.16
VPS39Q96JC1 AC080078.2-201ENST00000603766 501 ntBASIC1.58□□□□□ -2.16
VPS39Q96JC1 AP001485.1-201ENST00000604799 199 ntBASIC1.58□□□□□ -2.16
VPS39Q96JC1 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC1.58□□□□□ -2.16
VPS39Q96JC1 AC009248.2-201ENST00000619826 254 ntBASIC1.58□□□□□ -2.16
VPS39Q96JC1 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.58□□□□□ -2.16
VPS39Q96JC1 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS39Q96JC1 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.57□□□□□ -2.16
VPS39Q96JC1 RNU1-76P-201ENST00000362903 159 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 RNU6-418P-201ENST00000384035 107 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 RNU6-296P-201ENST00000384608 107 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
VPS39Q96JC1 EBAG9P1-201ENST00000418955 543 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 EIF1P1-201ENST00000421436 341 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 AC004386.2-201ENST00000441858 148 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 AC116666.1-201ENST00000453915 551 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS39Q96JC1 AC010531.2-201ENST00000465012 153 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.57□□□□□ -2.16
VPS39Q96JC1 AC023790.1-201ENST00000482174 347 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 RPS23P5-201ENST00000495419 428 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 Y_RNA.682-201ENST00000516457 100 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 RNU6-566P-201ENST00000516790 107 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 MTND4LP26-201ENST00000518144 282 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 MIR3683-201ENST00000580847 82 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 POLR3GP2-201ENST00000588366 668 ntBASIC1.57□□□□□ -2.16
VPS39Q96JC1 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.57□□□□□ -2.16
VPS39Q96JC1 AL161722.3-201ENST00000605789 2983 ntBASIC1.56□□□□□ -2.16
VPS39Q96JC1 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.56□□□□□ -2.16
VPS39Q96JC1 Y_RNA.157-201ENST00000363638 102 ntBASIC1.56□□□□□ -2.16
VPS39Q96JC1 SNORD31B-201ENST00000364977 69 ntBASIC1.56□□□□□ -2.16
VPS39Q96JC1 U8.10-201ENST00000384260 133 ntBASIC1.56□□□□□ -2.16
VPS39Q96JC1 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.56□□□□□ -2.16
VPS39Q96JC1 USP9YP30-201ENST00000430729 455 ntBASIC1.56□□□□□ -2.16
VPS39Q96JC1 AC245517.4-201ENST00000448601 281 ntBASIC1.56□□□□□ -2.16
VPS39Q96JC1 RPL36AP21-201ENST00000490372 323 ntBASIC1.56□□□□□ -2.16
VPS39Q96JC1 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.56□□□□□ -2.16
VPS39Q96JC1 RNA5SP454-201ENST00000517231 127 ntBASIC1.56□□□□□ -2.16
VPS39Q96JC1 SNORA77B-201ENST00000578179 125 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 197.9 ms