Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNA5SP102-201ENST00000516865 106 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 RRN3P3-201ENST00000549207 578 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 FGF7P1-201ENST00000582820 288 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 AL353149.1-201ENST00000610667 244 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 RMST_3.1-201ENST00000611651 109 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 AC009509.4-201ENST00000619202 509 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 AL121890.5-201ENST00000620848 304 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 MTND5P35-201ENST00000557537 1720 ntBASIC1.51□□□□□ -2.17
HDDC3Q8N4P3 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 AP000568.1-201ENST00000282964 442 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 RNU4-13P-201ENST00000364019 141 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 SNORA63D-201ENST00000364359 132 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 RNU4-20P-201ENST00000365601 151 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 RNU6-1235P-201ENST00000384559 107 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 MIR7-2-201ENST00000384970 110 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 EIF4E2P1-201ENST00000393781 255 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 DEFB108C-201ENST00000400154 252 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 AL117342.1-201ENST00000404861 406 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 AL354695.1-201ENST00000427935 228 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 AC009237.7-201ENST00000447357 229 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 NFU1P2-201ENST00000448700 469 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 TPT1P7-201ENST00000458300 517 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 RNU6-498P-201ENST00000459468 107 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 AC023790.1-201ENST00000482174 347 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 MTCO1P29-201ENST00000496868 288 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 AC079140.2-201ENST00000506193 142 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 RNU6-902P-201ENST00000517212 91 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 MRPS36P4-201ENST00000534436 298 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 MIR3937-201ENST00000580135 106 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 SNRPGP20-201ENST00000604477 205 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 MIR6863-201ENST00000636112 90 ntBASIC1.5□□□□□ -2.17
HDDC3Q8N4P3 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 MTND4P5-201ENST00000435821 1374 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 SNORD33-201ENST00000362761 85 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 RNU6-1085P-201ENST00000363576 107 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 SNORD1A-201ENST00000364968 72 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 SNORA72.2-201ENST00000365028 127 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 RNU6-331P-201ENST00000384724 107 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 MIR613-201ENST00000385248 95 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 COX6CP10-201ENST00000416832 224 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 TRAPPC2P8-201ENST00000440676 396 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 AC016717.1-201ENST00000448918 286 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 snoU13.27-201ENST00000459278 104 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 RNU6-1332P-201ENST00000516666 104 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 AC019176.1-201ENST00000518519 225 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 AC146944.4-201ENST00000602697 718 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 AL158209.2-201ENST00000619266 216 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 AC068792.1-201ENST00000621354 417 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 OR5AK4P-201ENST00000635912 903 ntBASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.49□□□□□ -2.17
HDDC3Q8N4P3 RNU6-1305P-201ENST00000364353 104 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 RNU6-975P-201ENST00000384296 105 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 RNU6-1119P-201ENST00000384349 108 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 MIR549A-201ENST00000385268 96 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 MRPL35P1-201ENST00000404272 572 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 AL135790.2-201ENST00000437701 267 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 OR2AQ1P-201ENST00000451972 200 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 MTND3P16-201ENST00000452205 344 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 MTCO3P8-201ENST00000453691 755 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 RPS29P23-201ENST00000458635 123 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 AC092436.3-201ENST00000511788 257 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 RNU6-1146P-201ENST00000516282 102 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 AC011604.1-201ENST00000545978 196 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 PRR13P7-201ENST00000605538 430 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 MIR8076-201ENST00000611401 83 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 AC073534.2-201ENST00000620377 381 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 AC006001.4-201ENST00000622243 395 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 AC097520.1-201ENST00000624435 385 ntBASIC1.48□□□□□ -2.17
HDDC3Q8N4P3 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 MIR1253-201ENST00000408273 105 ntBASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 HMGN2P34-201ENST00000437647 269 ntBASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 AC073910.1-201ENST00000445047 438 ntBASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 Y_RNA.675-201ENST00000516389 149 ntBASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 MTND1P35-201ENST00000526739 508 ntBASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 MTND1P15-201ENST00000579262 949 ntBASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 AC137590.2-201ENST00000619709 240 ntBASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 AC095038.3-201ENST00000634439 195 ntBASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 MIR338-201ENST00000636369 67 ntBASIC1.47□□□□□ -2.17
HDDC3Q8N4P3 MIR302D-201ENST00000362275 68 ntBASIC1.46□□□□□ -2.18
HDDC3Q8N4P3 snoU2-30.2-201ENST00000362805 70 ntBASIC1.46□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 153.8 ms