Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SUMO2P18-201ENST00000518873 252 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.47□□□□□ -2.17
SKA3Q8IX90 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.47□□□□□ -2.17
SKA3Q8IX90 MIR4790-201ENST00000577799 79 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 AC005786.1-201ENST00000588553 154 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.47□□□□□ -2.17
SKA3Q8IX90 AC083806.3-201ENST00000614016 455 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 AC002553.4-201ENST00000616896 331 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 AC137590.2-201ENST00000619709 240 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.47□□□□□ -2.17
SKA3Q8IX90 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
SKA3Q8IX90 MTND5P9-201ENST00000503854 1755 ntBASIC1.47□□□□□ -2.17
SKA3Q8IX90 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.46□□□□□ -2.18
SKA3Q8IX90 ZNF204P-201ENST00000416749 2397 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 Y_RNA.132-201ENST00000363421 102 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 RNU6-1059P-201ENST00000363752 98 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 RNU4-9P-201ENST00000364951 139 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 Y_RNA.505-201ENST00000384489 102 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 MIR32-201ENST00000384965 70 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 AL356776.1-201ENST00000406574 447 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 MIR1283-1-201ENST00000408494 87 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC1.46□□□□□ -2.18
SKA3Q8IX90 RPL30P16-201ENST00000419341 429 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 AL139396.1-201ENST00000421137 167 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 HMGB1P18-201ENST00000438801 619 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 AC009237.7-201ENST00000447357 229 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 AC007215.1-201ENST00000464893 276 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 AC097473.1-201ENST00000508142 408 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 RNU6-970P-201ENST00000516312 107 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 AC022254.1-201ENST00000567857 235 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC1.46□□□□□ -2.18
SKA3Q8IX90 MIR4742-201ENST00000581069 85 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 MIR4298-201ENST00000584380 73 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 MIR4753-201ENST00000585119 83 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 MIR502-201ENST00000606349 86 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 RMST_6.1-201ENST00000611980 203 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.46□□□□□ -2.18
SKA3Q8IX90 MTND4P5-201ENST00000435821 1374 ntBASIC1.46□□□□□ -2.18
SKA3Q8IX90 ANKRD20A9P-201ENST00000457997 2978 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 AL159152.1-201ENST00000635019 2587 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 SNORD115-32-201ENST00000364079 82 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 MIR300-201ENST00000401138 83 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 Y_RNA.619-201ENST00000410951 90 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.45□□□□□ -2.18
SKA3Q8IX90 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.45□□□□□ -2.18
SKA3Q8IX90 MTCO1P44-201ENST00000441935 243 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.45□□□□□ -2.18
SKA3Q8IX90 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.45□□□□□ -2.18
SKA3Q8IX90 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.45□□□□□ -2.18
SKA3Q8IX90 RNU6-856P-201ENST00000516959 98 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 RNU1-54P-201ENST00000517181 120 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.45□□□□□ -2.18
SKA3Q8IX90 GNAI2P1-201ENST00000541815 315 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 AC092490.2-202ENST00000544922 462 ntTSL 3 BASIC1.45□□□□□ -2.18
SKA3Q8IX90 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC1.45□□□□□ -2.18
SKA3Q8IX90 MIR4713-201ENST00000582691 75 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 SNRPGP20-201ENST00000604477 205 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 BNIP3P10-201ENST00000605360 577 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.45□□□□□ -2.18
SKA3Q8IX90 MIR6128-201ENST00000615528 109 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.45□□□□□ -2.18
SKA3Q8IX90 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.45□□□□□ -2.18
SKA3Q8IX90 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.45□□□□□ -2.18
SKA3Q8IX90 Y_RNA.319-201ENST00000365138 92 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 Y_RNA.533-201ENST00000384596 114 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 RNA5SP212-201ENST00000391223 107 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 AC009310.1-201ENST00000414414 451 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.44□□□□□ -2.18
SKA3Q8IX90 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.44□□□□□ -2.18
SKA3Q8IX90 AL357134.1-201ENST00000445848 426 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 ATP5J2P3-201ENST00000451550 258 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.44□□□□□ -2.18
SKA3Q8IX90 RNU6-329P-201ENST00000459618 107 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 HMGN2P9-201ENST00000476875 229 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC1.44□□□□□ -2.18
SKA3Q8IX90 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC1.44□□□□□ -2.18
SKA3Q8IX90 Y_RNA.682-201ENST00000516457 100 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 AF235103.2-201ENST00000525753 346 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.44□□□□□ -2.18
SKA3Q8IX90 MIR4255-201ENST00000579351 72 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC1.44□□□□□ -2.18
SKA3Q8IX90 MIR3683-201ENST00000580847 82 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 U6atac.1-201ENST00000616025 117 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 AL359697.1-201ENST00000624879 587 ntBASIC1.44□□□□□ -2.18
SKA3Q8IX90 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
SKA3Q8IX90 Y_RNA.301-201ENST00000364990 103 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 RNU6-418P-201ENST00000384035 107 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 MIR548F5-201ENST00000408421 86 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 MIR320B2-201ENST00000408479 138 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 RNU6-955P-201ENST00000410497 104 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 RNA5SP100-201ENST00000410903 110 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 RNA5SP59-201ENST00000410922 110 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 AC243428.1-201ENST00000421099 264 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC1.43□□□□□ -2.18
SKA3Q8IX90 USP9YP30-201ENST00000430729 455 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 AL445305.1-201ENST00000432577 575 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 AL591806.2-201ENST00000433122 173 ntBASIC1.43□□□□□ -2.18
SKA3Q8IX90 FGF7P6-202ENST00000451282 293 ntBASIC1.43□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 187.4 ms