Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AL034345.1-201ENST00000407768 123 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 RNA5SP222-201ENST00000411039 105 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.04□□□□□ -2.4
USP54Q70EL1 CDK8P2-201ENST00000415020 547 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 AL162725.1-201ENST00000435405 301 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 SNORA31.10-201ENST00000516482 106 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 AC109479.2-201ENST00000517842 174 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 AL592221.1-201ENST00000605266 382 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 AL512427.1-201ENST00000618593 349 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 AL136221.1-201ENST00000621449 509 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC0.04□□□□□ -2.4
USP54Q70EL1 SNORD114-16-201ENST00000363044 70 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 MTCO1P19-201ENST00000443487 500 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 LINC00345-201ENST00000443679 285 ntTSL 5 BASIC0.03□□□□□ -2.4
USP54Q70EL1 AL360271.2-201ENST00000447710 161 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 AC104136.1-201ENST00000512969 394 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 MTND1P15-201ENST00000579262 949 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 AL162730.1-201ENST00000605734 292 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 AC100812.1-201ENST00000607622 580 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 PART1_2.1-201ENST00000612397 250 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 AC012409.4-201ENST00000612923 249 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 SEPT14P17-201ENST00000617978 177 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 AC097372.5-201ENST00000623665 376 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 ZNF736P9Y-201ENST00000439586 1345 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 MTND5P16-201ENST00000460269 1703 ntBASIC0.03□□□□□ -2.4
USP54Q70EL1 MIR103A2-201ENST00000362154 78 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 SNORA16.2-201ENST00000390991 127 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 CALM2P3-201ENST00000400429 449 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 SNORD111-201ENST00000408139 94 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC0.02□□□□□ -2.41
USP54Q70EL1 AC090960.1-201ENST00000421072 306 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AL117351.1-201ENST00000438864 766 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AL133217.1-201ENST00000450980 425 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AC079382.1-201ENST00000493346 557 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.02□□□□□ -2.41
USP54Q70EL1 AC117522.1-201ENST00000509821 380 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 RNU6-1069P-201ENST00000516612 133 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC0.02□□□□□ -2.41
USP54Q70EL1 AL136317.1-201ENST00000612653 226 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AP002782.1-201ENST00000623107 614 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AL359697.1-201ENST00000624879 587 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC0.02□□□□□ -2.41
USP54Q70EL1 RNU1-76P-201ENST00000362903 159 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 RNU6-428P-201ENST00000362942 107 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 Y_RNA.192-201ENST00000363977 102 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 MIR660-201ENST00000385235 97 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 RPS29P13-201ENST00000402041 169 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AL031779.1-201ENST00000415663 330 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AL354692.1-201ENST00000423044 315 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC0.02□□□□□ -2.41
USP54Q70EL1 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.02□□□□□ -2.41
USP54Q70EL1 RPL37P21-201ENST00000435890 276 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AC016717.1-201ENST00000448918 286 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AC013470.1-201ENST00000453438 462 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AL049830.1-201ENST00000468034 425 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.02□□□□□ -2.41
USP54Q70EL1 AC008521.1-201ENST00000587471 187 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AC022217.4-201ENST00000604389 163 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AC104458.1-201ENST00000608243 463 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 AL359075.3-201ENST00000613288 217 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 TCL6_2.1-201ENST00000615162 119 ntBASIC0.02□□□□□ -2.41
USP54Q70EL1 Y_RNA.46-201ENST00000362695 102 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 SNORD32A-201ENST00000364805 84 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 RNA5SP331-201ENST00000364986 107 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 RNU6-1240P-201ENST00000365155 104 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 AC012306.1-201ENST00000423267 114 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.01□□□□□ -2.41
USP54Q70EL1 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.01□□□□□ -2.41
USP54Q70EL1 HSFY7P-201ENST00000432672 318 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 USP9YP28-201ENST00000435142 589 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 HMGN2P34-201ENST00000437647 269 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 HSFY8P-201ENST00000437934 318 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC0.01□□□□□ -2.41
USP54Q70EL1 AC245047.8-201ENST00000456455 284 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 OR9P1P-201ENST00000496431 281 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 SNORA68.3-201ENST00000515906 83 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 RNU6-123P-201ENST00000516163 102 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 RN7SKP12-201ENST00000516275 143 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 RNU6-1096P-201ENST00000517089 102 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 AC091965.4-201ENST00000607691 587 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 AP000484.1-201ENST00000620067 1252 ntBASIC0.01□□□□□ -2.41
USP54Q70EL1 MIR103A1-201ENST00000362165 78 ntBASIC0□□□□□ -2.41
USP54Q70EL1 Y_RNA.170-201ENST00000363746 110 ntBASIC0□□□□□ -2.41
USP54Q70EL1 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC0□□□□□ -2.41
USP54Q70EL1 MIR518A1-201ENST00000385068 85 ntBASIC0□□□□□ -2.41
USP54Q70EL1 SNORA75.2-201ENST00000391138 150 ntBASIC0□□□□□ -2.41
USP54Q70EL1 SNORA75.3-201ENST00000391231 150 ntBASIC0□□□□□ -2.41
USP54Q70EL1 MTCO2P7-201ENST00000446518 666 ntBASIC0□□□□□ -2.41
USP54Q70EL1 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC0□□□□□ -2.41
USP54Q70EL1 AC027419.1-201ENST00000522976 328 ntBASIC0□□□□□ -2.41
USP54Q70EL1 AC064872.1-201ENST00000604823 1072 ntBASIC0□□□□□ -2.41
USP54Q70EL1 RAC1P9-201ENST00000604990 392 ntBASIC0□□□□□ -2.41
USP54Q70EL1 Z99289.3-201ENST00000605586 594 ntBASIC0□□□□□ -2.41
USP54Q70EL1 AC092354.1-201ENST00000606057 376 ntBASIC0□□□□□ -2.41
USP54Q70EL1 AL139022.2-201ENST00000606934 443 ntBASIC0□□□□□ -2.41
USP54Q70EL1 AC099786.3-201ENST00000565735 1410 ntBASIC-0.01□□□□□ -2.41
USP54Q70EL1 SNORD44.1-201ENST00000363202 61 ntBASIC-0.01□□□□□ -2.41
USP54Q70EL1 SNORD56.2-201ENST00000363242 71 ntBASIC-0.01□□□□□ -2.41
USP54Q70EL1 RNU6-413P-201ENST00000384115 107 ntBASIC-0.01□□□□□ -2.41
USP54Q70EL1 RNU6-190P-201ENST00000384154 102 ntBASIC-0.01□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms