Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 MIR145-201ENST00000384967 88 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC-0.3□□□□□ -2.46
USF3Q68DE3 CDK8P2-201ENST00000415020 547 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC-0.3□□□□□ -2.46
USF3Q68DE3 RNU7-94P-201ENST00000459576 63 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 RNA5SP67-201ENST00000516422 131 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 SNORA43.2-201ENST00000516652 128 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 AC022893.3-201ENST00000607665 437 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 MTND5P42-201ENST00000637720 498 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 AC083799.1-201ENST00000366451 910 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 RNU6-946P-201ENST00000383878 107 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 MIR643-201ENST00000385267 97 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 SNORA75.6-201ENST00000391318 127 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 MIR548H2-201ENST00000408874 88 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 Y_RNA.689-201ENST00000516589 107 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 AL512347.1-201ENST00000566420 503 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 MIR3146-201ENST00000580367 79 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 AC004987.4-201ENST00000603383 338 ntBASIC-0.3□□□□□ -2.46
USF3Q68DE3 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC-0.31□□□□□ -2.46
USF3Q68DE3 RNU6-289P-201ENST00000364093 107 ntBASIC-0.31□□□□□ -2.46
USF3Q68DE3 RNU6-1305P-201ENST00000364353 104 ntBASIC-0.31□□□□□ -2.46
USF3Q68DE3 RNU6-269P-201ENST00000391077 97 ntBASIC-0.31□□□□□ -2.46
USF3Q68DE3 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.31□□□□□ -2.46
USF3Q68DE3 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC-0.31□□□□□ -2.46
USF3Q68DE3 TPT1P7-201ENST00000458300 517 ntBASIC-0.31□□□□□ -2.46
USF3Q68DE3 AC010486.2-201ENST00000505572 483 ntBASIC-0.31□□□□□ -2.46
USF3Q68DE3 SUMO2P5-201ENST00000506790 245 ntBASIC-0.31□□□□□ -2.46
USF3Q68DE3 RNU6-1098P-201ENST00000516772 96 ntBASIC-0.31□□□□□ -2.46
USF3Q68DE3 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC-0.31□□□□□ -2.46
USF3Q68DE3 Z99497.2-201ENST00000603634 310 ntBASIC-0.31□□□□□ -2.46
USF3Q68DE3 MESTIT1_1.1-201ENST00000618871 140 ntBASIC-0.31□□□□□ -2.46
USF3Q68DE3 AC099654.8-201ENST00000637757 681 ntBASIC-0.31□□□□□ -2.46
USF3Q68DE3 AP000568.1-201ENST00000282964 442 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 Y_RNA.287-201ENST00000364853 94 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 RNU6-417P-201ENST00000384712 107 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 RNU2-3P-201ENST00000410144 191 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 MTCYBP39-201ENST00000437562 491 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 AHI1-208ENST00000488690 712 ntTSL 5 BASIC-0.32□□□□□ -2.46
USF3Q68DE3 AP003716.2-201ENST00000528260 108 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC-0.32□□□□□ -2.46
USF3Q68DE3 AC023827.1-201ENST00000569247 97 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 RNU6-94P-201ENST00000607728 107 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 AC005520.5-201ENST00000613926 164 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 TCL6_2.1-201ENST00000615162 119 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC-0.32□□□□□ -2.46
USF3Q68DE3 RNU5A-8P-201ENST00000364102 114 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 RNY3P5-201ENST00000384127 102 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 Y_RNA.572-201ENST00000384757 98 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 MIR10A-201ENST00000385043 110 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 MIR760-201ENST00000390220 80 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 RNU2-62P-201ENST00000410868 191 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.32□□□□□ -2.46
USF3Q68DE3 AL122001.1-201ENST00000457027 370 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 RNU6-953P-201ENST00000459154 107 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC-0.32□□□□□ -2.46
USF3Q68DE3 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC-0.32□□□□□ -2.46
USF3Q68DE3 MTND1P36-201ENST00000522384 936 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 AC021451.1-201ENST00000523498 1129 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 AC115990.1-201ENST00000526957 301 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC-0.32□□□□□ -2.46
USF3Q68DE3 AC138869.1-201ENST00000568623 124 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 AC110760.3-201ENST00000598794 467 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 AC122133.1-201ENST00000613964 233 ntBASIC-0.32□□□□□ -2.46
USF3Q68DE3 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC-0.32□□□□□ -2.46
USF3Q68DE3 RNU6-756P-201ENST00000383997 107 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNA5SP300-201ENST00000391197 107 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 MIR892B-201ENST00000401279 77 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNU6-994P-201ENST00000410507 111 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 AC093850.1-201ENST00000454121 251 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC-0.33□□□□□ -2.46
USF3Q68DE3 snoU13.21-201ENST00000459368 105 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC-0.33□□□□□ -2.46
USF3Q68DE3 AC023632.1-201ENST00000518463 375 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 AC138749.5-201ENST00000611461 208 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 U6.42-201ENST00000618440 107 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 FTX_2.1-201ENST00000618816 94 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNU6-1141P-201ENST00000364520 107 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNA5SP517-201ENST00000364724 117 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNU6-650P-201ENST00000365658 111 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 Y_RNA.488-201ENST00000384403 102 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 MIR106A-201ENST00000384870 81 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 EIF4E2P1-201ENST00000393781 255 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNU7-14P-201ENST00000459331 62 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNU4-49P-201ENST00000516080 140 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNU2-34P-201ENST00000516534 121 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNU1-142P-201ENST00000516682 145 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNA5SP268-201ENST00000516828 124 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNU6-782P-201ENST00000516852 104 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 RNU6-64P-201ENST00000517119 105 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC-0.33□□□□□ -2.46
USF3Q68DE3 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC-0.33□□□□□ -2.46
USF3Q68DE3 AC013244.3-201ENST00000605614 388 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 AL354696.1-201ENST00000614652 497 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC-0.33□□□□□ -2.46
USF3Q68DE3 U6.108-201ENST00000637764 58 ntBASIC-0.33□□□□□ -2.46
USF3Q68DE3 SNORA18.1-201ENST00000363418 128 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 TIMM9P2-201ENST00000419324 266 ntBASIC-0.34□□□□□ -2.46
USF3Q68DE3 AC006366.1-201ENST00000422002 759 ntBASIC-0.34□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms