Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 GPR143P-201ENST00000434155 205 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AC119618.1-201ENST00000434191 222 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AC079781.2-201ENST00000446424 169 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 HMGB1P29-201ENST00000505659 499 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-123P-201ENST00000516163 102 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-948P-201ENST00000516374 107 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-410P-201ENST00000517006 107 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 MIR4636-201ENST00000582271 80 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AC242498.1-201ENST00000604134 111 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AL158032.1-201ENST00000605401 106 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AC138749.5-201ENST00000611461 208 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AC116165.2-201ENST00000616705 206 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AC126177.8-201ENST00000618339 1015 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AC243994.1-201ENST00000618627 109 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 uc_338.17-201ENST00000619633 179 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AL513423.1-201ENST00000621695 132 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-1287P-201ENST00000362914 107 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 U3.8-201ENST00000363675 217 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 RNU4-28P-201ENST00000364739 141 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 SNORA32.2-201ENST00000384049 122 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-1060P-201ENST00000384664 107 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 MTCYBP36-201ENST00000404146 440 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 RPL39P39-201ENST00000455840 151 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 RBBP4P6-201ENST00000508098 202 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AP002001.1-203ENST00000534002 267 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 ZNF519P3-201ENST00000557158 1032 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AC018554.1-201ENST00000565506 800 ntTSL 2 BASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 AC064872.1-201ENST00000604823 1072 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 OR5AK4P-201ENST00000635912 903 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 MTND4P16-201ENST00000466108 1367 ntBASIC0.44□□□□□ -2.34
CCDC88AQ3V6T2 Y_RNA.287-201ENST00000364853 94 ntBASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 Z99497.1-201ENST00000421282 135 ntBASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 AC011233.1-201ENST00000422812 283 ntBASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 AL365184.2-201ENST00000431139 435 ntBASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 GMFBP1-201ENST00000467831 427 ntBASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 AC091951.3-201ENST00000504093 246 ntBASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 RNA5SP54-201ENST00000516951 92 ntBASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 MTND4LP18-201ENST00000526864 291 ntBASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 AL929325.1-201ENST00000603096 117 ntBASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 AC018645.2-201ENST00000609151 472 ntBASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 AP002371.2-201ENST00000624450 503 ntBASIC0.43□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-179P-201ENST00000363350 107 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-1097P-201ENST00000363586 107 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 Y_RNA.390-201ENST00000383932 102 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-517P-201ENST00000384362 110 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 MIR548B-201ENST00000385247 97 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 MIR454-201ENST00000390180 115 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 AL162399.1-201ENST00000426090 130 ntTSL 3 BASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 AC010975.2-201ENST00000427781 588 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 AC113410.1-201ENST00000505029 247 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 AC069113.1-201ENST00000517763 267 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 AC022868.1-201ENST00000517767 391 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 AC022432.1-201ENST00000595739 310 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 AC068137.4-201ENST00000638485 296 ntBASIC0.42□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-501P-201ENST00000364072 100 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-157P-201ENST00000383957 107 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 SNORA67.2-201ENST00000384300 149 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 RNU5A-2P-201ENST00000384337 116 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 Y_RNA.476-201ENST00000384347 108 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 MTATP6P16-201ENST00000434543 526 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC093019.1-201ENST00000443135 252 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 MTATP6P14-201ENST00000455189 673 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-221P-201ENST00000459541 99 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC091435.1-201ENST00000505442 584 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-1041P-201ENST00000516254 102 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 Y_RNA.672-201ENST00000516289 104 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AP002428.1-201ENST00000527345 380 ntTSL 3 BASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AL391840.1-201ENST00000571144 367 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 MTND1P15-201ENST00000579262 949 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC091178.2-201ENST00000584401 117 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AL157392.4-201ENST00000609756 345 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 CASC19-280ENST00000642102 1351 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 RNU4-67P-201ENST00000364569 141 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 SNORA50A-201ENST00000384225 134 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-1026P-201ENST00000384465 108 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 MIR586-201ENST00000385035 97 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 SNORD12-201ENST00000391002 90 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 RNU1-119P-201ENST00000391122 165 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 MIR891A-201ENST00000401237 79 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AL590135.1-201ENST00000422215 156 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC019205.3-201ENST00000424573 156 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC010154.1-201ENST00000425857 269 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC016700.2-201ENST00000446011 156 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC022364.2-201ENST00000457963 554 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 RPS29P27-201ENST00000463711 170 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC098869.1-201ENST00000481627 292 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 AC015911.1-201ENST00000495111 156 ntBASIC0.41□□□□□ -2.34
CCDC88AQ3V6T2 RNU6-1069P-201ENST00000516612 133 ntBASIC0.41□□□□□ -2.34
Retrieved 100 of 98,524 protein–RNA pairs in 105.3 ms