Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AC244015.1-201ENST00000622301 99 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC0.23□□□□□ -2.37
CHD3Q12873 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.23□□□□□ -2.37
CHD3Q12873 ANKRD30BP1-201ENST00000451052 2186 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 RNU6-545P-201ENST00000362681 104 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 RNU6-199P-201ENST00000362954 107 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 SNORD56.2-201ENST00000363242 71 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 RNU6-108P-201ENST00000365558 107 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 RNU6-245P-201ENST00000384020 107 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 RNU6-769P-201ENST00000384407 104 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 RNU6-1257P-201ENST00000384625 110 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 Y_RNA.549-201ENST00000384657 102 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 CDK8P2-201ENST00000415020 547 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 snoU13.25-201ENST00000458945 104 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC0.23□□□□□ -2.37
CHD3Q12873 RNU6-1041P-201ENST00000516254 102 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 MTND4LP26-201ENST00000518144 282 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 MTND1P15-201ENST00000579262 949 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AC073539.2-201ENST00000597113 165 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 Z98751.3-201ENST00000604447 521 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AL158211.2-201ENST00000607282 395 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AP000484.1-201ENST00000620067 1252 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AL513423.1-201ENST00000621695 132 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 AC100810.6-201ENST00000638068 285 ntBASIC0.23□□□□□ -2.37
CHD3Q12873 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.23□□□□□ -2.37
CHD3Q12873 MIR103A2-201ENST00000362154 78 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 RNU6-1067P-201ENST00000384752 107 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 MTND2P9-201ENST00000422293 931 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 AL355314.2-201ENST00000427182 436 ntTSL 3 BASIC0.22□□□□□ -2.37
CHD3Q12873 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.22□□□□□ -2.37
CHD3Q12873 USP9YP28-201ENST00000435142 589 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC0.22□□□□□ -2.37
CHD3Q12873 RPEP5-201ENST00000441137 268 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 AC098869.1-201ENST00000481627 292 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 AP003168.1-201ENST00000530091 307 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 MIR4307-201ENST00000582802 84 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 RPL17P51-201ENST00000605218 238 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 AC063943.3-201ENST00000615562 356 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 AC138649.3-201ENST00000622154 254 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 AL603839.4-201ENST00000624658 1005 ntBASIC0.22□□□□□ -2.37
CHD3Q12873 RNU4-79P-201ENST00000362764 141 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 RNU6-552P-201ENST00000362869 119 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 RNU6-1026P-201ENST00000384465 108 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 RNA5SP25-201ENST00000410815 110 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 RPS25P9-201ENST00000435591 252 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 SNRPGP7-201ENST00000469016 106 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AF186996.7-201ENST00000492781 209 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AC010587.1-201ENST00000505809 469 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AC104136.1-201ENST00000512969 394 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC0.21□□□□□ -2.38
CHD3Q12873 RNU6-276P-201ENST00000516114 96 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 RNU1-142P-201ENST00000516682 145 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 MIR4742-201ENST00000581069 85 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AC018714.1-201ENST00000605028 208 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AC064807.4-201ENST00000607201 407 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AC240442.1-201ENST00000616055 283 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AC027807.2-201ENST00000616099 408 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 snoZ196.1-201ENST00000625269 89 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 OR5AK4P-201ENST00000635912 903 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 RPS26P5-201ENST00000418544 335 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AC093019.1-201ENST00000443135 252 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 NDUFB4P10-201ENST00000452541 359 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.21□□□□□ -2.38
CHD3Q12873 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.21□□□□□ -2.38
CHD3Q12873 AC091178.2-201ENST00000584401 117 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AL136221.1-201ENST00000621449 509 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AL157786.1-207ENST00000627771 695 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 AC068137.4-201ENST00000638485 296 ntBASIC0.21□□□□□ -2.38
CHD3Q12873 RNU6-1317P-201ENST00000364582 104 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 RNU6-1335P-201ENST00000365426 107 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 RNU6-945P-201ENST00000383947 107 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 RNU6-975P-201ENST00000384296 105 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 RNU6-1186P-201ENST00000410429 97 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.2□□□□□ -2.38
CHD3Q12873 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC0.2□□□□□ -2.38
CHD3Q12873 AC079382.1-201ENST00000493346 557 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 SNORA19.3-201ENST00000516165 130 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 RNU2-34P-201ENST00000516534 121 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC0.2□□□□□ -2.38
CHD3Q12873 AC004584.2-201ENST00000570407 410 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 RSL24D1P11-201ENST00000591045 491 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 AL031281.1-201ENST00000604049 488 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 PART1_2.1-201ENST00000612397 250 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 AL138726.1-201ENST00000614873 333 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 AL049777.1-201ENST00000622740 518 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 AC068647.2-201ENST00000637380 353 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.2□□□□□ -2.38
CHD3Q12873 SNORA32.2-201ENST00000384049 122 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.2□□□□□ -2.38
CHD3Q12873 MTND3P1-201ENST00000441336 220 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.2□□□□□ -2.38
CHD3Q12873 AL451064.1-201ENST00000607718 471 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC0.2□□□□□ -2.38
CHD3Q12873 AL360219.1-201ENST00000610230 366 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 AL357075.2-201ENST00000614906 189 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.2□□□□□ -2.38
CHD3Q12873 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.2□□□□□ -2.38
CHD3Q12873 UGP2-231ENST00000627474 264 ntTSL 5 BASIC0.2□□□□□ -2.38
CHD3Q12873 MIR660-201ENST00000385235 97 ntBASIC0.19□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms