Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 Y_RNA.718-201ENST00000517110 102 ntBASIC2.16□□□□□ -2.06
MSH2P43246 RNA5SP490-201ENST00000517141 136 ntBASIC2.16□□□□□ -2.06
MSH2P43246 MIR3935-201ENST00000583472 104 ntBASIC2.16□□□□□ -2.06
MSH2P43246 AC008749.1-201ENST00000597650 306 ntBASIC2.16□□□□□ -2.06
MSH2P43246 AL117336.2-201ENST00000602435 335 ntBASIC2.16□□□□□ -2.06
MSH2P43246 SNRPGP20-201ENST00000604477 205 ntBASIC2.16□□□□□ -2.06
MSH2P43246 AL355802.3-201ENST00000607571 545 ntBASIC2.16□□□□□ -2.06
MSH2P43246 AC100812.1-201ENST00000607622 580 ntBASIC2.16□□□□□ -2.06
MSH2P43246 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.16□□□□□ -2.06
MSH2P43246 TCL6_2.1-201ENST00000615162 119 ntBASIC2.16□□□□□ -2.06
MSH2P43246 uc_338.20-201ENST00000621563 178 ntBASIC2.16□□□□□ -2.06
MSH2P43246 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.16□□□□□ -2.06
MSH2P43246 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.15□□□□□ -2.06
MSH2P43246 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.15□□□□□ -2.06
MSH2P43246 ZNF204P-201ENST00000416749 2397 ntBASIC2.15□□□□□ -2.06
MSH2P43246 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
MSH2P43246 Y_RNA.67-201ENST00000362870 100 ntBASIC2.15□□□□□ -2.07
MSH2P43246 RNU6-137P-201ENST00000363680 108 ntBASIC2.15□□□□□ -2.07
MSH2P43246 RNA5SP160-201ENST00000364866 120 ntBASIC2.15□□□□□ -2.07
MSH2P43246 RNU6-890P-201ENST00000384121 107 ntBASIC2.15□□□□□ -2.07
MSH2P43246 MIR597-201ENST00000384968 97 ntBASIC2.15□□□□□ -2.07
MSH2P43246 RNU6-700P-201ENST00000391043 107 ntBASIC2.15□□□□□ -2.07
MSH2P43246 AL135786.1-201ENST00000415892 214 ntBASIC2.15□□□□□ -2.07
MSH2P43246 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
MSH2P43246 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.15□□□□□ -2.07
MSH2P43246 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
MSH2P43246 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.15□□□□□ -2.07
MSH2P43246 AC004386.2-201ENST00000441858 148 ntBASIC2.15□□□□□ -2.07
MSH2P43246 ELOCP24-201ENST00000456370 334 ntBASIC2.15□□□□□ -2.07
MSH2P43246 RNA5SP233-201ENST00000459153 113 ntBASIC2.15□□□□□ -2.07
MSH2P43246 RNU7-14P-201ENST00000459331 62 ntBASIC2.15□□□□□ -2.07
MSH2P43246 RPL17P19-201ENST00000489069 552 ntBASIC2.15□□□□□ -2.07
MSH2P43246 Y_RNA.706-201ENST00000516933 99 ntBASIC2.15□□□□□ -2.07
MSH2P43246 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC2.15□□□□□ -2.07
MSH2P43246 MIR4299-201ENST00000577899 72 ntBASIC2.15□□□□□ -2.07
MSH2P43246 MIR4795-201ENST00000584182 89 ntBASIC2.15□□□□□ -2.07
MSH2P43246 AC025754.2-201ENST00000606491 432 ntBASIC2.15□□□□□ -2.07
MSH2P43246 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.15□□□□□ -2.07
MSH2P43246 AL627230.6-201ENST00000611129 280 ntBASIC2.15□□□□□ -2.07
MSH2P43246 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.15□□□□□ -2.07
MSH2P43246 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.14□□□□□ -2.07
MSH2P43246 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
MSH2P43246 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
MSH2P43246 Y_RNA.58-201ENST00000362807 102 ntBASIC2.14□□□□□ -2.07
MSH2P43246 Y_RNA.154-201ENST00000363624 102 ntBASIC2.14□□□□□ -2.07
MSH2P43246 RNU6-1164P-201ENST00000364428 107 ntBASIC2.14□□□□□ -2.07
MSH2P43246 RNY3P1-201ENST00000365085 102 ntBASIC2.14□□□□□ -2.07
MSH2P43246 RNY3-201ENST00000365484 102 ntBASIC2.14□□□□□ -2.07
MSH2P43246 RNU6-541P-201ENST00000384709 110 ntBASIC2.14□□□□□ -2.07
MSH2P43246 MIR320B2-201ENST00000408479 138 ntBASIC2.14□□□□□ -2.07
MSH2P43246 AL158823.1-201ENST00000418441 478 ntBASIC2.14□□□□□ -2.07
MSH2P43246 MTCYBP10-201ENST00000424905 650 ntBASIC2.14□□□□□ -2.07
MSH2P43246 MTND3P23-201ENST00000431980 347 ntBASIC2.14□□□□□ -2.07
MSH2P43246 RPL23AP6-201ENST00000446637 472 ntBASIC2.14□□□□□ -2.07
MSH2P43246 MTCO3P8-201ENST00000453691 755 ntBASIC2.14□□□□□ -2.07
MSH2P43246 SNORD19B-201ENST00000459623 84 ntBASIC2.14□□□□□ -2.07
MSH2P43246 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.14□□□□□ -2.07
MSH2P43246 ANP32BP3-201ENST00000559213 706 ntBASIC2.14□□□□□ -2.07
MSH2P43246 MIR5006-201ENST00000583027 110 ntBASIC2.14□□□□□ -2.07
MSH2P43246 AC005034.5-201ENST00000604219 466 ntBASIC2.14□□□□□ -2.07
MSH2P43246 AC133104.2-201ENST00000615272 193 ntBASIC2.14□□□□□ -2.07
MSH2P43246 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.14□□□□□ -2.07
MSH2P43246 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
MSH2P43246 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.14□□□□□ -2.07
MSH2P43246 RNU1-58P-201ENST00000362413 163 ntBASIC2.13□□□□□ -2.07
MSH2P43246 XGY1-201ENST00000381172 446 ntBASIC2.13□□□□□ -2.07
MSH2P43246 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.13□□□□□ -2.07
MSH2P43246 RNU6-159P-201ENST00000391080 106 ntBASIC2.13□□□□□ -2.07
MSH2P43246 MIR190B-201ENST00000401119 79 ntBASIC2.13□□□□□ -2.07
MSH2P43246 AC004866.1-201ENST00000411748 78 ntBASIC2.13□□□□□ -2.07
MSH2P43246 MTCO2P27-201ENST00000420740 428 ntBASIC2.13□□□□□ -2.07
MSH2P43246 AC009237.7-201ENST00000447357 229 ntBASIC2.13□□□□□ -2.07
MSH2P43246 AP000870.1-201ENST00000472927 406 ntBASIC2.13□□□□□ -2.07
MSH2P43246 AC022493.2-201ENST00000506122 481 ntBASIC2.13□□□□□ -2.07
MSH2P43246 AC008549.1-201ENST00000512900 643 ntBASIC2.13□□□□□ -2.07
MSH2P43246 AC093303.1-201ENST00000514549 295 ntBASIC2.13□□□□□ -2.07
MSH2P43246 RNU6-120P-201ENST00000516077 103 ntBASIC2.13□□□□□ -2.07
MSH2P43246 SCARNA16.3-201ENST00000516595 184 ntBASIC2.13□□□□□ -2.07
MSH2P43246 MIR514B-201ENST00000516774 80 ntBASIC2.13□□□□□ -2.07
MSH2P43246 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.13□□□□□ -2.07
MSH2P43246 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.13□□□□□ -2.07
MSH2P43246 AL773524.1-201ENST00000614065 229 ntBASIC2.13□□□□□ -2.07
MSH2P43246 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.13□□□□□ -2.07
MSH2P43246 AC084781.2-201ENST00000615568 161 ntBASIC2.13□□□□□ -2.07
MSH2P43246 AL590808.1-201ENST00000618696 141 ntBASIC2.13□□□□□ -2.07
MSH2P43246 AL359697.1-201ENST00000624879 587 ntBASIC2.13□□□□□ -2.07
MSH2P43246 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
MSH2P43246 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.12□□□□□ -2.07
MSH2P43246 RNU4-79P-201ENST00000362764 141 ntBASIC2.12□□□□□ -2.07
MSH2P43246 Y_RNA.99-201ENST00000363138 105 ntBASIC2.12□□□□□ -2.07
MSH2P43246 Y_RNA.106-201ENST00000363189 100 ntBASIC2.12□□□□□ -2.07
MSH2P43246 SNORD31B-201ENST00000364977 69 ntBASIC2.12□□□□□ -2.07
MSH2P43246 Y_RNA.332-201ENST00000365271 113 ntBASIC2.12□□□□□ -2.07
MSH2P43246 RNU6-245P-201ENST00000384020 107 ntBASIC2.12□□□□□ -2.07
MSH2P43246 HMGN2P19-201ENST00000425149 265 ntBASIC2.12□□□□□ -2.07
MSH2P43246 AC236972.2-201ENST00000434979 310 ntBASIC2.12□□□□□ -2.07
MSH2P43246 MTND2P29-201ENST00000438595 412 ntBASIC2.12□□□□□ -2.07
MSH2P43246 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.12□□□□□ -2.07
MSH2P43246 RNU7-152P-201ENST00000458982 64 ntBASIC2.12□□□□□ -2.07
MSH2P43246 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 150.3 ms