Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZNF204P-201ENST00000416749 2397 ntBASIC1.91□□□□□ -2.1
BDNFP23560 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.91□□□□□ -2.1
BDNFP23560 RNA5SP432-201ENST00000362480 116 ntBASIC1.91□□□□□ -2.1
BDNFP23560 RNU6-137P-201ENST00000363680 108 ntBASIC1.91□□□□□ -2.1
BDNFP23560 SNORA16.1-201ENST00000364597 132 ntBASIC1.91□□□□□ -2.1
BDNFP23560 Y_RNA.372-201ENST00000365599 102 ntBASIC1.91□□□□□ -2.1
BDNFP23560 RNU6-950P-201ENST00000384651 107 ntBASIC1.91□□□□□ -2.1
BDNFP23560 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.91□□□□□ -2.1
BDNFP23560 HMGN2P26-201ENST00000463169 339 ntBASIC1.91□□□□□ -2.1
BDNFP23560 AC005908.1-201ENST00000468701 347 ntBASIC1.91□□□□□ -2.1
BDNFP23560 MTCO2P30-201ENST00000503662 364 ntBASIC1.91□□□□□ -2.1
BDNFP23560 AC024995.1-201ENST00000523014 93 ntBASIC1.91□□□□□ -2.1
BDNFP23560 AC109635.3-201ENST00000529536 185 ntBASIC1.91□□□□□ -2.1
BDNFP23560 MIR8081-201ENST00000611533 95 ntBASIC1.91□□□□□ -2.1
BDNFP23560 AC126177.8-201ENST00000618339 1015 ntBASIC1.91□□□□□ -2.1
BDNFP23560 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.9□□□□□ -2.1
BDNFP23560 SNORD115-8-201ENST00000363856 82 ntBASIC1.9□□□□□ -2.11
BDNFP23560 RNA5SP99-201ENST00000364020 114 ntBASIC1.9□□□□□ -2.11
BDNFP23560 SNORD115-38-201ENST00000365037 82 ntBASIC1.9□□□□□ -2.11
BDNFP23560 Y_RNA.517-201ENST00000384551 106 ntBASIC1.9□□□□□ -2.11
BDNFP23560 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
BDNFP23560 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.9□□□□□ -2.11
BDNFP23560 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
BDNFP23560 AL117342.1-201ENST00000404861 406 ntBASIC1.9□□□□□ -2.11
BDNFP23560 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.9□□□□□ -2.11
BDNFP23560 snoU13.27-201ENST00000459278 104 ntBASIC1.9□□□□□ -2.11
BDNFP23560 RNU7-57P-201ENST00000459540 60 ntBASIC1.9□□□□□ -2.11
BDNFP23560 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC1.9□□□□□ -2.11
BDNFP23560 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.9□□□□□ -2.11
BDNFP23560 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.9□□□□□ -2.11
BDNFP23560 AC015540.1-201ENST00000615828 501 ntBASIC1.9□□□□□ -2.11
BDNFP23560 AC006504.8-201ENST00000621046 635 ntBASIC1.9□□□□□ -2.11
BDNFP23560 MIR8063-201ENST00000621930 81 ntBASIC1.9□□□□□ -2.11
BDNFP23560 AC008873.1-201ENST00000625051 138 ntBASIC1.9□□□□□ -2.11
BDNFP23560 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.9□□□□□ -2.11
BDNFP23560 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC1.9□□□□□ -2.11
BDNFP23560 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.89□□□□□ -2.11
BDNFP23560 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.89□□□□□ -2.11
BDNFP23560 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.89□□□□□ -2.11
BDNFP23560 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.89□□□□□ -2.11
BDNFP23560 RNU4-24P-201ENST00000364565 139 ntBASIC1.89□□□□□ -2.11
BDNFP23560 MIR153-2-201ENST00000385225 87 ntBASIC1.89□□□□□ -2.11
BDNFP23560 MIR549A-201ENST00000385268 96 ntBASIC1.89□□□□□ -2.11
BDNFP23560 SUMO2P12-201ENST00000405924 140 ntBASIC1.89□□□□□ -2.11
BDNFP23560 AC009161.1-201ENST00000417306 376 ntBASIC1.89□□□□□ -2.11
BDNFP23560 AL358453.1-201ENST00000422522 250 ntBASIC1.89□□□□□ -2.11
BDNFP23560 MTATP6P26-201ENST00000445926 662 ntBASIC1.89□□□□□ -2.11
BDNFP23560 RNU7-187P-201ENST00000458985 68 ntBASIC1.89□□□□□ -2.11
BDNFP23560 RN7SL274P-201ENST00000492268 272 ntBASIC1.89□□□□□ -2.11
BDNFP23560 RNA5SP437-201ENST00000517249 129 ntBASIC1.89□□□□□ -2.11
BDNFP23560 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.89□□□□□ -2.11
BDNFP23560 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.89□□□□□ -2.11
BDNFP23560 SNORA77B-201ENST00000578179 125 ntBASIC1.89□□□□□ -2.11
BDNFP23560 AL121890.5-201ENST00000620848 304 ntBASIC1.89□□□□□ -2.11
BDNFP23560 Six3os1_7.1-201ENST00000621512 201 ntBASIC1.89□□□□□ -2.11
BDNFP23560 DUXAP9-208ENST00000622815 614 ntBASIC1.89□□□□□ -2.11
BDNFP23560 snoZ196.1-201ENST00000625269 89 ntBASIC1.89□□□□□ -2.11
BDNFP23560 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.89□□□□□ -2.11
BDNFP23560 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.89□□□□□ -2.11
BDNFP23560 Y_RNA.573-201ENST00000384763 105 ntBASIC1.88□□□□□ -2.11
BDNFP23560 RNA5SP323-201ENST00000391094 133 ntBASIC1.88□□□□□ -2.11
BDNFP23560 Y_RNA.615-201ENST00000410769 117 ntBASIC1.88□□□□□ -2.11
BDNFP23560 HMGN2P34-201ENST00000437647 269 ntBASIC1.88□□□□□ -2.11
BDNFP23560 AC079140.2-201ENST00000506193 142 ntBASIC1.88□□□□□ -2.11
BDNFP23560 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.88□□□□□ -2.11
BDNFP23560 RNU6-256P-201ENST00000516747 97 ntBASIC1.88□□□□□ -2.11
BDNFP23560 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.88□□□□□ -2.11
BDNFP23560 AP003465.2-201ENST00000602571 373 ntBASIC1.88□□□□□ -2.11
BDNFP23560 AC103591.3-201ENST00000608684 209 ntBASIC1.88□□□□□ -2.11
BDNFP23560 AC092954.2-201ENST00000609103 430 ntBASIC1.88□□□□□ -2.11
BDNFP23560 AL353997.5-201ENST00000618886 171 ntBASIC1.88□□□□□ -2.11
BDNFP23560 Y_RNA.9-201ENST00000362354 101 ntBASIC1.87□□□□□ -2.11
BDNFP23560 Y_RNA.402-201ENST00000383972 102 ntBASIC1.87□□□□□ -2.11
BDNFP23560 RNU6-1065P-201ENST00000384513 106 ntBASIC1.87□□□□□ -2.11
BDNFP23560 RNA5SP213-201ENST00000391031 106 ntBASIC1.87□□□□□ -2.11
BDNFP23560 RNU6-57P-201ENST00000411348 103 ntBASIC1.87□□□□□ -2.11
BDNFP23560 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC1.87□□□□□ -2.11
BDNFP23560 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.87□□□□□ -2.11
BDNFP23560 AC016717.1-201ENST00000448918 286 ntBASIC1.87□□□□□ -2.11
BDNFP23560 RPS26P55-201ENST00000471178 356 ntBASIC1.87□□□□□ -2.11
BDNFP23560 RNU6-902P-201ENST00000517212 91 ntBASIC1.87□□□□□ -2.11
BDNFP23560 MIR3122-201ENST00000577243 73 ntBASIC1.87□□□□□ -2.11
BDNFP23560 MIR4419B-201ENST00000577260 68 ntBASIC1.87□□□□□ -2.11
BDNFP23560 SNORA59B-202ENST00000578183 701 ntBASIC1.87□□□□□ -2.11
BDNFP23560 AC023043.2-201ENST00000589678 1026 ntBASIC1.87□□□□□ -2.11
BDNFP23560 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.87□□□□□ -2.11
BDNFP23560 AC124303.1-201ENST00000605703 360 ntBASIC1.87□□□□□ -2.11
BDNFP23560 AC019193.3-201ENST00000609144 554 ntBASIC1.87□□□□□ -2.11
BDNFP23560 AL138726.1-201ENST00000614873 333 ntBASIC1.87□□□□□ -2.11
BDNFP23560 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.87□□□□□ -2.11
BDNFP23560 AC006001.4-201ENST00000622243 395 ntBASIC1.87□□□□□ -2.11
BDNFP23560 MTND5P35-201ENST00000557537 1720 ntBASIC1.86□□□□□ -2.11
BDNFP23560 RNU1-62P-201ENST00000362599 164 ntBASIC1.86□□□□□ -2.11
BDNFP23560 RNU6-451P-201ENST00000362921 107 ntBASIC1.86□□□□□ -2.11
BDNFP23560 RNU1-17P-201ENST00000363022 152 ntBASIC1.86□□□□□ -2.11
BDNFP23560 Y_RNA.151-201ENST00000363566 112 ntBASIC1.86□□□□□ -2.11
BDNFP23560 RNU6-280P-201ENST00000364145 104 ntBASIC1.86□□□□□ -2.11
BDNFP23560 Y_RNA.256-201ENST00000364594 104 ntBASIC1.86□□□□□ -2.11
BDNFP23560 Y_RNA.414-201ENST00000384011 101 ntBASIC1.86□□□□□ -2.11
BDNFP23560 RNU6-541P-201ENST00000384709 110 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms