Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 SRP72-202ENST00000504757 745 ntTSL 2 BASIC1.03□□□□□ -2.24
USF1P22415 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.03□□□□□ -2.24
USF1P22415 RNU6-1069P-201ENST00000516612 133 ntBASIC1.03□□□□□ -2.24
USF1P22415 Y_RNA.695-201ENST00000516715 107 ntBASIC1.03□□□□□ -2.24
USF1P22415 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.03□□□□□ -2.24
USF1P22415 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.03□□□□□ -2.24
USF1P22415 CENPUP1-201ENST00000526649 1202 ntBASIC1.03□□□□□ -2.24
USF1P22415 AC011604.1-201ENST00000545978 196 ntBASIC1.03□□□□□ -2.24
USF1P22415 SCOCP1-201ENST00000554676 349 ntBASIC1.03□□□□□ -2.24
USF1P22415 AC019288.1-201ENST00000557918 224 ntBASIC1.03□□□□□ -2.24
USF1P22415 MIR4709-201ENST00000577272 72 ntBASIC1.03□□□□□ -2.24
USF1P22415 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.03□□□□□ -2.24
USF1P22415 FGF7P1-201ENST00000582820 288 ntBASIC1.03□□□□□ -2.24
USF1P22415 AC073648.5-201ENST00000603502 305 ntBASIC1.03□□□□□ -2.24
USF1P22415 AC080078.3-201ENST00000605407 463 ntBASIC1.03□□□□□ -2.24
USF1P22415 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.03□□□□□ -2.24
USF1P22415 RNU6-1317P-201ENST00000364582 104 ntBASIC1.02□□□□□ -2.25
USF1P22415 RNU6-534P-201ENST00000364877 106 ntBASIC1.02□□□□□ -2.25
USF1P22415 RNU6-1329P-201ENST00000365664 107 ntBASIC1.02□□□□□ -2.25
USF1P22415 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.02□□□□□ -2.25
USF1P22415 USP9YP14-201ENST00000430663 563 ntBASIC1.02□□□□□ -2.25
USF1P22415 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
USF1P22415 MTND4P5-201ENST00000435821 1374 ntBASIC1.02□□□□□ -2.25
USF1P22415 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.02□□□□□ -2.25
USF1P22415 AC016717.1-201ENST00000448918 286 ntBASIC1.02□□□□□ -2.25
USF1P22415 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.02□□□□□ -2.25
USF1P22415 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC1.02□□□□□ -2.25
USF1P22415 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.02□□□□□ -2.25
USF1P22415 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC1.02□□□□□ -2.25
USF1P22415 AC007215.1-201ENST00000464893 276 ntBASIC1.02□□□□□ -2.25
USF1P22415 RPS26P45-201ENST00000471748 340 ntBASIC1.02□□□□□ -2.25
USF1P22415 HMGB1P29-201ENST00000505659 499 ntBASIC1.02□□□□□ -2.25
USF1P22415 AC025423.5-201ENST00000550230 219 ntBASIC1.02□□□□□ -2.25
USF1P22415 AC068338.1-201ENST00000565567 176 ntBASIC1.02□□□□□ -2.25
USF1P22415 SNRPGP20-201ENST00000604477 205 ntBASIC1.02□□□□□ -2.25
USF1P22415 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC1.02□□□□□ -2.25
USF1P22415 AL355802.3-201ENST00000607571 545 ntBASIC1.02□□□□□ -2.25
USF1P22415 AC007684.1-201ENST00000609671 477 ntBASIC1.02□□□□□ -2.25
USF1P22415 AL158063.1-201ENST00000615349 536 ntBASIC1.02□□□□□ -2.25
USF1P22415 Y_RNA.123-201ENST00000363338 102 ntBASIC1.01□□□□□ -2.25
USF1P22415 SNORA25.8-201ENST00000364831 128 ntBASIC1.01□□□□□ -2.25
USF1P22415 RNU6-968P-201ENST00000384076 107 ntBASIC1.01□□□□□ -2.25
USF1P22415 MIR618-201ENST00000385287 98 ntBASIC1.01□□□□□ -2.25
USF1P22415 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.01□□□□□ -2.25
USF1P22415 AL353193.1-201ENST00000421444 268 ntBASIC1.01□□□□□ -2.25
USF1P22415 MRPL35P3-201ENST00000421557 364 ntBASIC1.01□□□□□ -2.25
USF1P22415 AL606489.2-201ENST00000433886 234 ntBASIC1.01□□□□□ -2.25
USF1P22415 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.01□□□□□ -2.25
USF1P22415 HMGN2P34-201ENST00000437647 269 ntBASIC1.01□□□□□ -2.25
USF1P22415 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.01□□□□□ -2.25
USF1P22415 AC093852.1-201ENST00000503587 266 ntBASIC1.01□□□□□ -2.25
USF1P22415 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.01□□□□□ -2.25
USF1P22415 SNORA40.12-201ENST00000516329 111 ntBASIC1.01□□□□□ -2.25
USF1P22415 AC104576.1-201ENST00000524225 88 ntBASIC1.01□□□□□ -2.25
USF1P22415 CYP3A52P-201ENST00000563326 91 ntBASIC1.01□□□□□ -2.25
USF1P22415 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.01□□□□□ -2.25
USF1P22415 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.01□□□□□ -2.25
USF1P22415 MIR4295-201ENST00000585286 85 ntBASIC1.01□□□□□ -2.25
USF1P22415 AC092747.3-201ENST00000603769 301 ntBASIC1.01□□□□□ -2.25
USF1P22415 AC121247.2-201ENST00000604776 136 ntBASIC1.01□□□□□ -2.25
USF1P22415 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.01□□□□□ -2.25
USF1P22415 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC1□□□□□ -2.25
USF1P22415 Y_RNA.1-201ENST00000352915 104 ntBASIC1□□□□□ -2.25
USF1P22415 MIR96-201ENST00000362288 78 ntBASIC1□□□□□ -2.25
USF1P22415 Y_RNA.296-201ENST00000364930 108 ntBASIC1□□□□□ -2.25
USF1P22415 SNORA4.2-201ENST00000365313 147 ntBASIC1□□□□□ -2.25
USF1P22415 SNORA75-201ENST00000384158 137 ntBASIC1□□□□□ -2.25
USF1P22415 MIR586-201ENST00000385035 97 ntBASIC1□□□□□ -2.25
USF1P22415 MIR513A1-201ENST00000385138 129 ntBASIC1□□□□□ -2.25
USF1P22415 SNORD37.1-201ENST00000390968 65 ntBASIC1□□□□□ -2.25
USF1P22415 MIR320B2-201ENST00000408479 138 ntBASIC1□□□□□ -2.25
USF1P22415 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1□□□□□ -2.25
USF1P22415 AC000123.1-201ENST00000418215 516 ntTSL 5 BASIC1□□□□□ -2.25
USF1P22415 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC1□□□□□ -2.25
USF1P22415 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC1□□□□□ -2.25
USF1P22415 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1□□□□□ -2.25
USF1P22415 MTCO3P8-201ENST00000453691 755 ntBASIC1□□□□□ -2.25
USF1P22415 RNU6-956P-201ENST00000458868 103 ntBASIC1□□□□□ -2.25
USF1P22415 RPS3AP17-201ENST00000472594 777 ntBASIC1□□□□□ -2.25
USF1P22415 AC087343.1-201ENST00000477341 475 ntBASIC1□□□□□ -2.25
USF1P22415 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1□□□□□ -2.25
USF1P22415 AL163195.1-201ENST00000496941 348 ntBASIC1□□□□□ -2.25
USF1P22415 RN7SKP298-201ENST00000515950 94 ntBASIC1□□□□□ -2.25
USF1P22415 AC024995.1-201ENST00000523014 93 ntBASIC1□□□□□ -2.25
USF1P22415 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1□□□□□ -2.25
USF1P22415 MRPS36P4-201ENST00000534436 298 ntBASIC1□□□□□ -2.25
USF1P22415 AL357078.3-201ENST00000607528 618 ntBASIC1□□□□□ -2.25
USF1P22415 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1□□□□□ -2.25
USF1P22415 Z69908.1-201ENST00000622603 247 ntBASIC1□□□□□ -2.25
USF1P22415 FER-210ENST00000628534 558 ntTSL 5 BASIC1□□□□□ -2.25
USF1P22415 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC1□□□□□ -2.25
USF1P22415 MIR549A-201ENST00000385268 96 ntBASIC0.99□□□□□ -2.25
USF1P22415 SNRPEP10-201ENST00000420249 274 ntBASIC0.99□□□□□ -2.25
USF1P22415 AL359672.1-201ENST00000442302 409 ntBASIC0.99□□□□□ -2.25
USF1P22415 OR2A41P-201ENST00000473586 105 ntBASIC0.99□□□□□ -2.25
USF1P22415 BET1P1-201ENST00000482276 359 ntBASIC0.99□□□□□ -2.25
USF1P22415 HMGN1P12-201ENST00000499125 195 ntBASIC0.99□□□□□ -2.25
USF1P22415 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC0.99□□□□□ -2.25
USF1P22415 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
USF1P22415 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.99□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms