Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 AL078596.1-201ENST00000624856 447 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 MIR6767-201ENST00000637302 66 ntBASIC0.56□□□□□ -2.32
LIMS3P0CW19 RNU4-28P-201ENST00000364739 141 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 RNU6-392P-201ENST00000364926 101 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 RNU6-606P-201ENST00000384721 111 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 MIR23A-201ENST00000385245 73 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 MIR320B2-201ENST00000408479 138 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 HMGN1P14-201ENST00000412459 517 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.55□□□□□ -2.32
LIMS3P0CW19 RPS26P5-201ENST00000418544 335 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.55□□□□□ -2.32
LIMS3P0CW19 AL593851.1-201ENST00000426171 157 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 Z82205.1-201ENST00000428456 297 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC0.55□□□□□ -2.32
LIMS3P0CW19 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC0.55□□□□□ -2.32
LIMS3P0CW19 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC0.55□□□□□ -2.32
LIMS3P0CW19 RPL39P39-201ENST00000455840 151 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 RNU6-1037P-201ENST00000459571 107 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 AC007215.1-201ENST00000464893 276 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 RNU6-947P-201ENST00000516264 106 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 RNA5SP255-201ENST00000516370 107 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 MTND2P32-201ENST00000521584 1038 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 AP003484.1-201ENST00000530974 250 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 AC090049.2-201ENST00000550377 109 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.55□□□□□ -2.32
LIMS3P0CW19 AC025449.1-201ENST00000603896 529 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 AC092354.1-201ENST00000606057 376 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 AC104465.1-201ENST00000611365 139 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 AP001506.1-201ENST00000615444 211 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 AC008873.1-201ENST00000625051 138 ntBASIC0.55□□□□□ -2.32
LIMS3P0CW19 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC0.55□□□□□ -2.32
LIMS3P0CW19 AC018630.2-201ENST00000534866 2403 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 RNU6-199P-201ENST00000362954 107 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 Y_RNA.140-201ENST00000363474 103 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 RNU6-110P-201ENST00000384508 104 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 MIR605-201ENST00000385078 83 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 SNORD41-201ENST00000386967 70 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.54□□□□□ -2.32
LIMS3P0CW19 SNORD11.1-201ENST00000459482 85 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 RNU6-221P-201ENST00000459541 99 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.54□□□□□ -2.32
LIMS3P0CW19 AC005178.1-201ENST00000508392 440 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 IGHVII-53-1-201ENST00000519538 255 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 DEFB108E-201ENST00000524692 240 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.54□□□□□ -2.32
LIMS3P0CW19 AL137161.1-201ENST00000532231 390 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.54□□□□□ -2.32
LIMS3P0CW19 AC245014.2-201ENST00000603689 287 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 AL357312.1-201ENST00000603879 298 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 CLPTM1LP1-201ENST00000604519 484 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 AC246785.4-201ENST00000605374 287 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 AP001596.2-201ENST00000608410 312 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 MIR6835-201ENST00000621552 64 ntBASIC0.54□□□□□ -2.32
LIMS3P0CW19 MIR92A1-201ENST00000385233 78 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 SNORA12.1-201ENST00000390873 148 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 AL451046.2-201ENST00000403074 277 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.53□□□□□ -2.32
LIMS3P0CW19 AC005002.2-201ENST00000438228 269 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.53□□□□□ -2.32
LIMS3P0CW19 OFD1P4Y-201ENST00000455273 1179 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 SNRPFP3-201ENST00000457792 225 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 RNU7-138P-201ENST00000459479 64 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 RPS29P27-201ENST00000463711 170 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 COX6CP6-201ENST00000490840 228 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 RPL39P5-202ENST00000512505 151 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 RNU6-322P-201ENST00000516010 103 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.53□□□□□ -2.32
LIMS3P0CW19 AC080078.2-201ENST00000603766 501 ntBASIC0.53□□□□□ -2.32
LIMS3P0CW19 RNU6-1286P-201ENST00000383871 107 ntBASIC0.52□□□□□ -2.33
LIMS3P0CW19 SNORA67.2-201ENST00000384300 149 ntBASIC0.52□□□□□ -2.33
LIMS3P0CW19 RNU6-456P-201ENST00000384493 107 ntBASIC0.52□□□□□ -2.33
LIMS3P0CW19 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
LIMS3P0CW19 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.52□□□□□ -2.33
LIMS3P0CW19 MTCO2P34-201ENST00000421994 607 ntBASIC0.52□□□□□ -2.33
LIMS3P0CW19 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.52□□□□□ -2.33
LIMS3P0CW19 ZNF736P12Y-201ENST00000443152 1243 ntBASIC0.52□□□□□ -2.33
LIMS3P0CW19 AL033528.1-201ENST00000453780 140 ntBASIC0.52□□□□□ -2.33
LIMS3P0CW19 RPS26P48-201ENST00000491713 339 ntBASIC0.52□□□□□ -2.33
LIMS3P0CW19 AC025465.4-201ENST00000513422 638 ntBASIC0.52□□□□□ -2.33
LIMS3P0CW19 AC011604.1-201ENST00000545978 196 ntBASIC0.52□□□□□ -2.33
LIMS3P0CW19 OR4G1P-203ENST00000641984 1631 ntBASIC0.52□□□□□ -2.33
LIMS3P0CW19 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
LIMS3P0CW19 SNORA40.3-201ENST00000390964 122 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 RNU6-733P-201ENST00000410759 104 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC0.51□□□□□ -2.33
LIMS3P0CW19 RNU7-90P-201ENST00000459216 62 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 RNU7-21P-201ENST00000459430 62 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 RNU7-94P-201ENST00000459576 63 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 RNU6-344P-201ENST00000516635 111 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 MRPS36P3-201ENST00000519284 130 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 AP002963.1-201ENST00000530590 184 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 MIR4778-201ENST00000577635 80 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 AC011458.1-201ENST00000604034 617 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 AL590095.2-201ENST00000604136 117 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 AL353765.1-201ENST00000605514 183 ntBASIC0.51□□□□□ -2.33
LIMS3P0CW19 CASC19-280ENST00000642102 1351 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 RNU4-12P-201ENST00000365233 139 ntBASIC0.5□□□□□ -2.33
LIMS3P0CW19 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 264 ms