Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 MTND4P32-201ENST00000437189 1237 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 RPL39P36-201ENST00000490784 156 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 MTND3P5-201ENST00000512798 333 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 AC122133.1-201ENST00000613964 233 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 AC024940.5-201ENST00000622889 474 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 AC083799.1-201ENST00000366451 910 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 SMIM11P1-201ENST00000369586 178 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 Y_RNA.495-201ENST00000384435 112 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 ZNF736P10Y-201ENST00000403990 1110 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 RNU6-1025P-201ENST00000410629 104 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 RNU6-856P-201ENST00000516959 98 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 AP001328.1-201ENST00000528550 176 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 LRRC6P1-201ENST00000532188 885 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 AC103798.1-201ENST00000532562 376 ntTSL 2 BASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 AC018889.1-201ENST00000605372 397 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 AL354696.1-201ENST00000614652 497 ntBASIC-0.92□□□□□ -2.56
CCDC88BA6NC98 RNU6-480P-201ENST00000384332 107 ntBASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 RNU6-1207P-201ENST00000384343 107 ntBASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 RNU6-1297P-201ENST00000384415 104 ntBASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 RNU6-1026P-201ENST00000384465 108 ntBASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 EIF4E2P1-201ENST00000393781 255 ntBASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 RNU6-782P-201ENST00000516852 104 ntBASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 MDM2-233ENST00000545204 398 ntTSL 5 BASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 MIR3681-201ENST00000580089 72 ntBASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 PART1_2.1-201ENST00000612397 250 ntBASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 MIR4788-201ENST00000639104 80 ntBASIC-0.93□□□□□ -2.56
CCDC88BA6NC98 BX322639.1-202ENST00000423987 2213 ntBASIC-0.94□□□□□ -2.56
CCDC88BA6NC98 MIR760-201ENST00000390220 80 ntBASIC-0.94□□□□□ -2.56
CCDC88BA6NC98 RPS20P2-201ENST00000402520 389 ntBASIC-0.94□□□□□ -2.56
CCDC88BA6NC98 RNU6-735P-201ENST00000410612 107 ntBASIC-0.94□□□□□ -2.56
CCDC88BA6NC98 AP003716.2-201ENST00000528260 108 ntBASIC-0.94□□□□□ -2.56
CCDC88BA6NC98 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC-0.94□□□□□ -2.56
CCDC88BA6NC98 AC022217.4-201ENST00000604389 163 ntBASIC-0.94□□□□□ -2.56
CCDC88BA6NC98 AL355073.2-201ENST00000612106 557 ntBASIC-0.94□□□□□ -2.56
CCDC88BA6NC98 RNU6-652P-201ENST00000365488 107 ntBASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 MIR301A-201ENST00000385261 86 ntBASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 MTND4P15-201ENST00000437913 1033 ntBASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 SNORD111.1-201ENST00000516421 86 ntBASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 RNU2-46P-201ENST00000517038 113 ntBASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 AL157871.3-201ENST00000557231 293 ntBASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 AC091135.1-201ENST00000585943 307 ntBASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 AL136363.2-201ENST00000604173 851 ntBASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 AC007684.1-201ENST00000609671 477 ntBASIC-0.95□□□□□ -2.56
CCDC88BA6NC98 AP000568.1-201ENST00000282964 442 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 MIR412-201ENST00000362142 91 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 RNU4-32P-201ENST00000363404 141 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 RNU6-359P-201ENST00000365466 108 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 Y_RNA.567-201ENST00000384736 106 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 MIR454-201ENST00000390180 115 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 AL079342.2-201ENST00000403367 482 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 AL365338.1-201ENST00000422282 858 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 MTCO2P7-201ENST00000446518 666 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 MTND1P17-201ENST00000448961 204 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 HSFY5P-201ENST00000453726 309 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 SNORA31.3-201ENST00000516029 96 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 RNU1-142P-201ENST00000516682 145 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 AC024995.1-201ENST00000523014 93 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 MIR4637-201ENST00000582405 84 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 AC110760.3-201ENST00000598794 467 ntBASIC-0.96□□□□□ -2.56
CCDC88BA6NC98 snoU2-30.2-201ENST00000362805 70 ntBASIC-0.97□□□□□ -2.56
CCDC88BA6NC98 RNU6-1005P-201ENST00000384519 107 ntBASIC-0.97□□□□□ -2.56
CCDC88BA6NC98 AL136310.1-201ENST00000404926 654 ntBASIC-0.97□□□□□ -2.56
CCDC88BA6NC98 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC-0.97□□□□□ -2.56
CCDC88BA6NC98 AC092427.1-201ENST00000439177 601 ntBASIC-0.97□□□□□ -2.56
CCDC88BA6NC98 AL139824.2-201ENST00000458731 1095 ntBASIC-0.97□□□□□ -2.56
CCDC88BA6NC98 AC107401.1-201ENST00000503426 685 ntBASIC-0.97□□□□□ -2.56
CCDC88BA6NC98 RNU6-1146P-201ENST00000516282 102 ntBASIC-0.97□□□□□ -2.56
CCDC88BA6NC98 AL162424.1-201ENST00000602325 221 ntBASIC-0.97□□□□□ -2.56
CCDC88BA6NC98 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC-0.97□□□□□ -2.56
CCDC88BA6NC98 AC093875.1-201ENST00000623688 504 ntBASIC-0.97□□□□□ -2.56
CCDC88BA6NC98 MIR544A-201ENST00000384855 91 ntBASIC-0.98□□□□□ -2.57
CCDC88BA6NC98 AC044784.2-201ENST00000447297 366 ntTSL 3 BASIC-0.98□□□□□ -2.57
CCDC88BA6NC98 Y_RNA.644-201ENST00000459006 113 ntBASIC-0.98□□□□□ -2.57
CCDC88BA6NC98 ZNF321P-202ENST00000550843 495 ntBASIC-0.98□□□□□ -2.57
CCDC88BA6NC98 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC-0.98□□□□□ -2.57
CCDC88BA6NC98 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC-0.98□□□□□ -2.57
CCDC88BA6NC98 AL162726.3-218ENST00000636401 95 ntBASIC-0.98□□□□□ -2.57
CCDC88BA6NC98 RNU6-545P-201ENST00000362681 104 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 RNU6-252P-201ENST00000363232 107 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 UBE2V1P11-201ENST00000411559 285 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AC106883.1-201ENST00000418805 562 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AC007283.2-201ENST00000424739 197 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 DEFB130D-201ENST00000426866 237 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AC245047.3-201ENST00000429428 127 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AC011891.1-201ENST00000437088 432 ntTSL 3 BASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 RPS23P5-201ENST00000495419 428 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AC022616.3-201ENST00000523940 148 ntBASIC-0.99□□□□□ -2.57
CCDC88BA6NC98 AC246785.4-201ENST00000605374 287 ntBASIC-0.99□□□□□ -2.57
Retrieved 100 of 98,524 protein–RNA pairs in 154.4 ms