Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 MIR3942-201ENST00000585264 109 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 AC233981.2-201ENST00000611524 1614 ntBASIC1.73□□□□□ -2.13
VPS54Q9P1Q0 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 SNORD50.1-201ENST00000362987 71 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 Y_RNA.100-201ENST00000363141 102 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 Y_RNA.212-201ENST00000364177 102 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 SNORD31B-201ENST00000364977 69 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 SNORA48.1-201ENST00000390879 135 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 RNU6-1148P-201ENST00000410992 104 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 RNU6-373P-201ENST00000411247 98 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 HSPE1P21-201ENST00000438283 308 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 AL353572.1-201ENST00000442490 417 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 AC130509.1-201ENST00000464158 433 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 RNU6-273P-201ENST00000516937 96 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 U4.5-201ENST00000617137 123 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 MESTIT1_1.1-201ENST00000618871 140 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 MIR3688-2-201ENST00000636963 87 ntBASIC1.72□□□□□ -2.13
VPS54Q9P1Q0 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.13
VPS54Q9P1Q0 RNU4-42P-201ENST00000364738 142 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 RNU6-1026P-201ENST00000384465 108 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 Y_RNA.573-201ENST00000384763 105 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 MIR487A-201ENST00000385009 80 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 MIR517C-201ENST00000385103 95 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 SNORA67.6-201ENST00000391093 99 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 AL354695.1-201ENST00000427935 228 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 RPL23AP75-201ENST00000491601 451 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 TRBVA-201ENST00000498804 316 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 MTND1P5-201ENST00000517906 940 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 GNAI2P1-201ENST00000541815 315 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 AC022254.1-201ENST00000567857 235 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 MIR4713-201ENST00000582691 75 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 AP000907.4-201ENST00000604143 237 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 AC090517.2-201ENST00000614966 680 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 AL353997.5-201ENST00000618886 171 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 AC009033.1-201ENST00000624279 431 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 AL359757.2-201ENST00000624309 274 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 AC022513.1-201ENST00000624512 117 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 MIR3662-201ENST00000637030 95 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.71□□□□□ -2.14
VPS54Q9P1Q0 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 CBX3P1-201ENST00000325243 554 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 SNORD116-11-201ENST00000383882 92 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 RNU6-831P-201ENST00000384548 107 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 RNU6-174P-201ENST00000410406 106 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 RPS20P15-201ENST00000412792 311 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 AC009310.1-201ENST00000414414 451 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 AC004386.2-201ENST00000441858 148 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 AC016925.1-201ENST00000458303 298 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 RNU1-131P-201ENST00000458943 161 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 AC087477.1-201ENST00000465747 340 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 AC023790.1-201ENST00000482174 347 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 RNU6-1314P-201ENST00000517139 104 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 SNORA59B-202ENST00000578183 701 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 RPL17P51-201ENST00000605218 238 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 AC019193.3-201ENST00000609144 554 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.7□□□□□ -2.14
VPS54Q9P1Q0 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 Y_RNA.135-201ENST00000363439 95 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 U8.10-201ENST00000384260 133 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 MIR517A-201ENST00000385001 87 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 SNORA67.5-201ENST00000391036 107 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 MTCO1P44-201ENST00000441935 243 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 OR2AQ1P-201ENST00000451972 200 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 MTCO3P8-201ENST00000453691 755 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 RPS29P25-201ENST00000481709 171 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 MTCO2P30-201ENST00000503662 364 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 MIR5006-201ENST00000583027 110 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 POLR3GP2-201ENST00000588366 668 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 AC103810.8-201ENST00000607347 118 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 AC005562.2-201ENST00000618264 111 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 AC073869.6-201ENST00000640656 341 ntBASIC1.69□□□□□ -2.14
VPS54Q9P1Q0 RNU6-661P-201ENST00000362409 107 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 Y_RNA.132-201ENST00000363421 102 ntBASIC1.68□□□□□ -2.14
VPS54Q9P1Q0 RNU6-418P-201ENST00000384035 107 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms