Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC023141.11-201ENST00000508864 202 ntBASIC2.14□□□□□ -2.07
SIX2Q9NPC8 ANP32BP3-201ENST00000559213 706 ntBASIC2.14□□□□□ -2.07
SIX2Q9NPC8 AC090616.3-201ENST00000582184 217 ntBASIC2.14□□□□□ -2.07
SIX2Q9NPC8 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.14□□□□□ -2.07
SIX2Q9NPC8 AL713866.2-201ENST00000603579 219 ntBASIC2.14□□□□□ -2.07
SIX2Q9NPC8 AC087588.2-201ENST00000617667 426 ntBASIC2.14□□□□□ -2.07
SIX2Q9NPC8 AC064859.1-201ENST00000624741 174 ntBASIC2.14□□□□□ -2.07
SIX2Q9NPC8 MIR219B-201ENST00000637023 88 ntBASIC2.14□□□□□ -2.07
SIX2Q9NPC8 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.14□□□□□ -2.07
SIX2Q9NPC8 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.14□□□□□ -2.07
SIX2Q9NPC8 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.14□□□□□ -2.07
SIX2Q9NPC8 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.13□□□□□ -2.07
SIX2Q9NPC8 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.13□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.148-201ENST00000363557 117 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.314-201ENST00000365114 102 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 MIR487A-201ENST00000385009 80 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 MIR208B-201ENST00000401172 77 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 AC145146.1-201ENST00000496370 254 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 RNU7-4P-201ENST00000516961 62 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 AC027288.2-201ENST00000553028 243 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.13□□□□□ -2.07
SIX2Q9NPC8 MIR3616-201ENST00000584070 92 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 AC092447.9-201ENST00000603395 144 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 AL356280.1-201ENST00000603614 379 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 AL670379.2-201ENST00000604983 252 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.13□□□□□ -2.07
SIX2Q9NPC8 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.13□□□□□ -2.07
SIX2Q9NPC8 PCGEM1.1-201ENST00000613431 131 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 AC007485.1-201ENST00000616755 206 ntBASIC2.13□□□□□ -2.07
SIX2Q9NPC8 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.13□□□□□ -2.07
SIX2Q9NPC8 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 RNU6-1159P-201ENST00000362933 107 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 RNU4-42P-201ENST00000364738 142 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.319-201ENST00000365138 92 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 RNU6-378P-201ENST00000384324 107 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 MIR144-201ENST00000384886 86 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 MIR627-201ENST00000384979 97 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 RNU6-220P-201ENST00000390919 107 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 SNORA46.1-201ENST00000391069 153 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 FO393413.1-201ENST00000402892 195 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 AL135786.1-201ENST00000415892 214 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 CHEK2P4-201ENST00000450340 246 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 RNA5SP82-201ENST00000516707 92 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 RNU6-988P-201ENST00000519081 107 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 MIR3117-201ENST00000584034 78 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 AC022432.1-201ENST00000595739 310 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.812-201ENST00000610788 101 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 AC006157.1-201ENST00000611750 366 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.784-201ENST00000613803 101 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 AC083806.3-201ENST00000614016 455 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.787-201ENST00000616522 101 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.780-201ENST00000617336 101 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.801-201ENST00000619005 101 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 AC138305.3-201ENST00000624988 240 ntBASIC2.12□□□□□ -2.07
SIX2Q9NPC8 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.12□□□□□ -2.07
SIX2Q9NPC8 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
SIX2Q9NPC8 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.11□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.106-201ENST00000363189 100 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 SNORD115-8-201ENST00000363856 82 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.202-201ENST00000364083 110 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 RNY3P11-201ENST00000364153 102 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 SNORD115-38-201ENST00000365037 82 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.364-201ENST00000365532 101 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 RNU6-1032P-201ENST00000384100 107 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 RNU6-301P-201ENST00000384277 107 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 MIR29B2-201ENST00000385055 81 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 RNA5SP425-201ENST00000410336 112 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC2.11□□□□□ -2.07
SIX2Q9NPC8 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.11□□□□□ -2.07
SIX2Q9NPC8 AC090515.1-201ENST00000465295 476 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 ANXA2P1-201ENST00000505539 926 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 RNU4-77P-201ENST00000516692 156 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.11□□□□□ -2.07
SIX2Q9NPC8 AC144568.1-201ENST00000520139 137 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC2.11□□□□□ -2.07
SIX2Q9NPC8 AC090517.3-201ENST00000625170 141 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 MIR4272-201ENST00000635924 64 ntBASIC2.11□□□□□ -2.07
SIX2Q9NPC8 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.11□□□□□ -2.07
SIX2Q9NPC8 KIAA1841-211ENST00000612149 4202 ntTSL 5 BASIC2.11□□□□□ -2.07
SIX2Q9NPC8 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.1□□□□□ -2.07
SIX2Q9NPC8 RNU6-222P-201ENST00000362438 107 ntBASIC2.1□□□□□ -2.07
SIX2Q9NPC8 Y_RNA.39-201ENST00000362620 98 ntBASIC2.1□□□□□ -2.07
SIX2Q9NPC8 RNU6-137P-201ENST00000363680 108 ntBASIC2.1□□□□□ -2.07
SIX2Q9NPC8 SNORA33.2-201ENST00000365413 134 ntBASIC2.1□□□□□ -2.07
SIX2Q9NPC8 RNU6-1274P-201ENST00000384557 107 ntBASIC2.1□□□□□ -2.07
SIX2Q9NPC8 SNORA69.1-201ENST00000390904 137 ntBASIC2.1□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms