Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 B3GNTL1P2-201ENST00000603673 288 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 AC016727.1-205ENST00000605437 569 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 AL132765.2-201ENST00000610812 351 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.15-201ENST00000611544 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.16-201ENST00000613119 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 Y_RNA.783-201ENST00000613546 102 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.12-201ENST00000613778 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.20-201ENST00000613956 192 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.9-201ENST00000615427 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.11-201ENST00000616345 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.2-201ENST00000616535 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 AL359314.1-201ENST00000616913 261 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.3-201ENST00000617785 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.19-201ENST00000618602 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 RNU2-1-201ENST00000618664 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.6-201ENST00000619225 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.5-201ENST00000619465 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 U2.10-201ENST00000620268 191 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 AL359697.1-201ENST00000624879 587 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2□□□□□ -2.09
CCDC3Q9BQI4 MIR1248-201ENST00000629190 106 ntBASIC2□□□□□ -2.09
CCDC3Q9BQI4 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
CCDC3Q9BQI4 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2□□□□□ -2.09
CCDC3Q9BQI4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 AC005336.3-201ENST00000623833 2679 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 KPNA2P1-201ENST00000458289 1591 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 RNU6-1059P-201ENST00000363752 98 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 Y_RNA.387-201ENST00000383918 102 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 MIR153-2-201ENST00000385225 87 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 SNORA12-201ENST00000391162 147 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 AL357139.1-201ENST00000407792 426 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 AC245102.2-201ENST00000448956 180 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 AL137159.1-201ENST00000452808 512 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 snoU13.6-201ENST00000458785 104 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 AC104435.1-201ENST00000483483 166 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 RNU7-175P-201ENST00000515915 61 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 SNORA31.25-201ENST00000517242 134 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 AC087441.2-201ENST00000529141 262 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 MIR5690-201ENST00000583739 73 ntBASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC1.99□□□□□ -2.09
CCDC3Q9BQI4 Y_RNA.99-201ENST00000363138 105 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 Y_RNA.332-201ENST00000365271 113 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 RNU6-245P-201ENST00000384020 107 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 Y_RNA.533-201ENST00000384596 114 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 MIR29C-201ENST00000385231 88 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 SNORA75.4-201ENST00000391278 119 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 SNORA26.9-201ENST00000391322 122 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 MTCYBP4-201ENST00000401524 249 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 AC019129.1-201ENST00000403786 261 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 AL356379.1-201ENST00000414105 126 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 AL603825.1-201ENST00000438481 80 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 PRELID3BP1-201ENST00000457142 540 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 FO393415.2-201ENST00000480085 343 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 AC093259.1-201ENST00000509755 300 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 SNRPGP20-201ENST00000604477 205 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 AC009229.3-201ENST00000608056 282 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 TCL6_2.1-201ENST00000615162 119 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 PISRT1.1-201ENST00000616930 107 ntBASIC1.98□□□□□ -2.09
CCDC3Q9BQI4 RNU6-1188P-201ENST00000363795 107 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 SNORD31B-201ENST00000364977 69 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 RNA5SP37-201ENST00000365420 130 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 MIR583-201ENST00000384846 75 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 SNORA12.2-201ENST00000391040 156 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 MIR320B2-201ENST00000408479 138 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 RNU4-14P-201ENST00000410858 122 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 RNU2-41P-201ENST00000410991 178 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 RNA5SP270-201ENST00000411361 118 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 AL139156.1-201ENST00000412785 841 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 AC093019.1-201ENST00000443135 252 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 AC007677.1-201ENST00000445757 515 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 HMGN2P18-201ENST00000450680 270 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 SNORA4.4-201ENST00000515921 135 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 AC005014.2-201ENST00000607795 599 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 MIR6845-201ENST00000613182 61 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 AC005562.2-201ENST00000618264 111 ntBASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC1.97□□□□□ -2.09
CCDC3Q9BQI4 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 ZNF355P-201ENST00000427301 3216 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 RNU5F-3P-201ENST00000363767 117 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 RNU4-52P-201ENST00000384209 138 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 HMGN2P39-201ENST00000398005 273 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 Z82188.1-201ENST00000436709 154 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC055731.1-201ENST00000474387 401 ntBASIC1.96□□□□□ -2.1
CCDC3Q9BQI4 AC107032.1-201ENST00000485945 480 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 160.6 ms