Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 U3.9-201ENST00000363823 204 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 Y_RNA.530-201ENST00000384587 101 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 RNU6-306P-201ENST00000384617 107 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 SNORA26.9-201ENST00000391322 122 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 MTCO1P44-201ENST00000441935 243 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 U8.21-201ENST00000459536 136 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 AC005908.1-201ENST00000468701 347 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 MTCO1P29-201ENST00000496868 288 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 AC114801.2-201ENST00000503825 781 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.64□□□□□ -2.15
VPS39Q96JC1 EIF4A1P12-201ENST00000551910 141 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 SNORA59B-202ENST00000578183 701 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 MIR4422-201ENST00000581938 83 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 AC011494.1-201ENST00000596454 237 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 AC009994.1-201ENST00000606889 253 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 AC084782.3-201ENST00000612282 578 ntBASIC1.64□□□□□ -2.15
VPS39Q96JC1 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.64□□□□□ -2.15
VPS39Q96JC1 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.64□□□□□ -2.15
VPS39Q96JC1 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
VPS39Q96JC1 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.63□□□□□ -2.15
VPS39Q96JC1 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
VPS39Q96JC1 Y_RNA.6-201ENST00000362350 114 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 RNU6-562P-201ENST00000362731 107 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 SNORA18.2-201ENST00000383865 132 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 RNU6-790P-201ENST00000384479 105 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 RNA5SP494-201ENST00000410653 129 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 RN7SKP101-201ENST00000411376 320 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 MTCO3P46-201ENST00000425787 232 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC1.63□□□□□ -2.15
VPS39Q96JC1 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.63□□□□□ -2.15
VPS39Q96JC1 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.63□□□□□ -2.15
VPS39Q96JC1 NFU1P2-201ENST00000448700 469 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 RNU7-14P-201ENST00000459331 62 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 AC116337.1-201ENST00000509680 687 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 RNU6-250P-201ENST00000516958 103 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 MTND1P5-201ENST00000517906 940 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.63□□□□□ -2.15
VPS39Q96JC1 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.63□□□□□ -2.15
VPS39Q96JC1 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.63□□□□□ -2.15
VPS39Q96JC1 AC090517.1-201ENST00000569307 266 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.63□□□□□ -2.15
VPS39Q96JC1 AC016727.2-201ENST00000603988 621 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 MIR8076-201ENST00000611401 83 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 AL136221.1-201ENST00000621449 509 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 AC098679.4-201ENST00000624241 654 ntBASIC1.63□□□□□ -2.15
VPS39Q96JC1 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.62□□□□□ -2.15
VPS39Q96JC1 Y_RNA.135-201ENST00000363439 95 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 RNU6-112P-201ENST00000363599 104 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 RNU6-414P-201ENST00000363705 104 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 RNU6-1286P-201ENST00000383871 107 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 SNORD116-11-201ENST00000383882 92 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 RNU6-968P-201ENST00000384076 107 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 RNU1-78P-201ENST00000391248 165 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 RNU6-192P-201ENST00000391253 100 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 MIR1289-2-201ENST00000408360 111 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 AL358453.1-201ENST00000422522 250 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS39Q96JC1 Z82188.1-201ENST00000436709 154 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS39Q96JC1 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS39Q96JC1 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
VPS39Q96JC1 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS39Q96JC1 HMGN1P13-201ENST00000505795 138 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS39Q96JC1 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.62□□□□□ -2.15
VPS39Q96JC1 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.62□□□□□ -2.15
VPS39Q96JC1 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 TP73-AS1.1-201ENST00000611447 161 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 AC005520.5-201ENST00000613926 164 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 AC022513.1-201ENST00000624512 117 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 AL133216.2-202ENST00000634512 349 ntBASIC1.62□□□□□ -2.15
VPS39Q96JC1 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
VPS39Q96JC1 RNU6-545P-201ENST00000362681 104 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 RNU6-1059P-201ENST00000363752 98 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 RNU6-438P-201ENST00000365561 103 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 RNU6-128P-201ENST00000383976 107 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 RNU6-933P-201ENST00000384424 107 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 MIR517A-201ENST00000385001 87 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 MIR504-201ENST00000385065 83 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 AC004866.1-201ENST00000411748 78 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 RPL30P16-201ENST00000419341 429 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 ZNF885P-201ENST00000420174 1098 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
VPS39Q96JC1 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.61□□□□□ -2.15
VPS39Q96JC1 AC007677.1-201ENST00000445757 515 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC1.61□□□□□ -2.15
VPS39Q96JC1 PCMTD1P1-201ENST00000455560 355 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 FO393415.2-201ENST00000480085 343 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 AC097473.1-201ENST00000508142 408 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 RNU4-49P-201ENST00000516080 140 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
VPS39Q96JC1 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.61□□□□□ -2.15
VPS39Q96JC1 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
VPS39Q96JC1 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.61□□□□□ -2.15
VPS39Q96JC1 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.61□□□□□ -2.15
VPS39Q96JC1 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.61□□□□□ -2.15
VPS39Q96JC1 MIR5094-201ENST00000578766 85 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.61□□□□□ -2.15
VPS39Q96JC1 MIR8081-201ENST00000611533 95 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 119.5 ms