Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 Y_RNA.569-201ENST00000384749 103 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 MIR32-201ENST00000384965 70 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 SNORD12B-201ENST00000410433 91 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 GPM6BP3-201ENST00000442797 145 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 AC096638.1-201ENST00000444678 216 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 AC073901.1-201ENST00000462471 408 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 AC091021.1-201ENST00000468051 388 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 RPL23AP70-201ENST00000483361 460 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 AC023141.11-201ENST00000508864 202 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.662-201ENST00000516028 97 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 MRPS18CP4-201ENST00000535821 231 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 AC027288.2-201ENST00000553028 243 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 MIR5680-201ENST00000577577 84 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 MIR3144-201ENST00000579460 79 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 MIR3136-201ENST00000583498 78 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 AL359198.2-201ENST00000611836 194 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 AL365265.1-201ENST00000621045 234 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 AC022149.2-201ENST00000621061 203 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 MIR30E-201ENST00000362104 92 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 RNU6-879P-201ENST00000364328 108 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.418-201ENST00000384029 102 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 U8.10-201ENST00000384260 133 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.570-201ENST00000384750 101 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 SNORA26.3-201ENST00000391119 136 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 CBX3P9-201ENST00000402326 552 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 RNU5A-5P-201ENST00000411054 116 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 RNU2-61P-201ENST00000411069 191 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 AL353705.4-201ENST00000449661 238 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 SNORD2.1-201ENST00000458762 69 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.638-201ENST00000459374 113 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 AC080013.2-201ENST00000460866 323 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 RNU6-1114P-201ENST00000516022 107 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 RNU5F-2P-201ENST00000516066 82 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 AC021231.3-201ENST00000558497 370 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 MIR548AI-201ENST00000579940 88 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 MIR7112-201ENST00000616126 65 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 SNORA43.4-201ENST00000629559 138 ntBASIC3.18□□□□□ -1.9
CLIP3Q96DZ5 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 RNU6-281P-201ENST00000384212 103 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 MIR10B-201ENST00000385011 110 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.590-201ENST00000410140 107 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 RNU6-1135P-201ENST00000411083 103 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 RPL19P1-201ENST00000411635 428 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 Z92545.1-201ENST00000411782 234 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 AC019205.3-201ENST00000424573 156 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 AC087477.1-201ENST00000465747 340 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 AC091959.1-201ENST00000495857 238 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 RN7SKP49-201ENST00000516675 260 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 RNU6-567P-201ENST00000516746 107 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 MIR3117-201ENST00000584034 78 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 RPL30P11-203ENST00000598995 310 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 SNORD98-201ENST00000636377 67 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 AC135776.4-201ENST00000624300 1904 ntBASIC3.17□□□□□ -1.9
CLIP3Q96DZ5 RNU5B-2P-201ENST00000363036 113 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.136-201ENST00000363444 102 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 RNU6-961P-201ENST00000363893 105 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 RNU4-56P-201ENST00000364700 142 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.398-201ENST00000383952 99 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.435-201ENST00000384095 112 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 SNORA29-201ENST00000384183 140 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 MIR329-1-201ENST00000385028 80 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 MIR153-2-201ENST00000385225 87 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 MTCO1P5-201ENST00000433573 344 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 RN7SL499P-201ENST00000481141 276 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 AC140059.1-201ENST00000489238 361 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 RNY3P16-201ENST00000516338 101 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 SNORA27.4-201ENST00000516650 95 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 AC107934.2-201ENST00000518653 310 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 MIR5571-201ENST00000577998 113 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 MIR4308-201ENST00000580634 81 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 AL078605.1-201ENST00000603529 500 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 AL356280.1-201ENST00000603614 379 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.16□□□□□ -1.9
CLIP3Q96DZ5 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 135.4 ms