Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 RNU6-933P-201ENST00000384424 107 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 SNORA8-201ENST00000384574 139 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 RNA5SP212-201ENST00000391223 107 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 Y_RNA.594-201ENST00000410373 140 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.97□□□□□ -2.09
RTL3Q8N8U3 EIF4EP2-201ENST00000422816 654 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 AC078809.1-201ENST00000427601 140 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.97□□□□□ -2.09
RTL3Q8N8U3 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.97□□□□□ -2.09
RTL3Q8N8U3 Y_RNA.632-201ENST00000459189 102 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 RNA5SP57-201ENST00000459463 123 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 UBL5P3-201ENST00000475112 231 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 AC132942.1-201ENST00000486753 483 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 AC145146.1-201ENST00000496370 254 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 AC091874.1-201ENST00000511402 339 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 Y_RNA.670-201ENST00000516255 105 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.97□□□□□ -2.09
RTL3Q8N8U3 APOOP3-201ENST00000536787 586 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 AC016256.1-201ENST00000547971 354 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC1.97□□□□□ -2.09
RTL3Q8N8U3 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.97□□□□□ -2.09
RTL3Q8N8U3 MIR5696-201ENST00000578474 85 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 MIR4795-201ENST00000584182 89 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 AC116312.1-201ENST00000606841 314 ntBASIC1.97□□□□□ -2.09
RTL3Q8N8U3 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC1.97□□□□□ -2.09
RTL3Q8N8U3 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.97□□□□□ -2.09
RTL3Q8N8U3 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
RTL3Q8N8U3 RNU6-1164P-201ENST00000364428 107 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
RTL3Q8N8U3 MTCYBP4-201ENST00000401524 249 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 RNU6-1050P-201ENST00000410388 107 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 RNU6-370P-201ENST00000411008 104 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AF228730.4-201ENST00000421457 183 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AL590135.1-201ENST00000422215 156 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AC019205.3-201ENST00000424573 156 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 MTND3P9-201ENST00000429526 346 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 MTND3P23-201ENST00000431980 347 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AC016700.2-201ENST00000446011 156 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AL513124.1-201ENST00000450410 614 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AC015911.1-201ENST00000495111 156 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 RNU6-559P-201ENST00000516151 98 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 Y_RNA.708-201ENST00000516950 96 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC1.96□□□□□ -2.1
RTL3Q8N8U3 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC1.96□□□□□ -2.1
RTL3Q8N8U3 HSPE1P4-201ENST00000550617 308 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 FRG2DP-202ENST00000566967 323 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AC009318.2-201ENST00000610917 651 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.96□□□□□ -2.1
RTL3Q8N8U3 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC1.96□□□□□ -2.1
RTL3Q8N8U3 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.96□□□□□ -2.1
RTL3Q8N8U3 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
RTL3Q8N8U3 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.95□□□□□ -2.1
RTL3Q8N8U3 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
RTL3Q8N8U3 RNU4-15P-201ENST00000362613 141 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 RNU6-1059P-201ENST00000363752 98 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 Y_RNA.404-201ENST00000383978 102 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 RNU6-1297P-201ENST00000384415 104 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 RNU6-790P-201ENST00000384479 105 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 RNU6-160P-201ENST00000384591 107 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 Y_RNA.535-201ENST00000384612 99 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 MIR597-201ENST00000384968 97 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 SNORA75.4-201ENST00000391278 119 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 AC019129.1-201ENST00000403786 261 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 RNU2-20P-201ENST00000410425 191 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 RNU2-40P-201ENST00000410833 196 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 EIF1AXP1-201ENST00000419267 435 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.95□□□□□ -2.1
RTL3Q8N8U3 SNORD19B-201ENST00000459623 84 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 AC079804.2-201ENST00000490376 200 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC1.95□□□□□ -2.1
RTL3Q8N8U3 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.95□□□□□ -2.1
RTL3Q8N8U3 ACA59.1-201ENST00000515966 143 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 Y_RNA.718-201ENST00000517110 102 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC1.95□□□□□ -2.1
RTL3Q8N8U3 AL078605.1-201ENST00000603529 500 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 AC009229.3-201ENST00000608056 282 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 AC130454.1-201ENST00000622948 401 ntBASIC1.95□□□□□ -2.1
RTL3Q8N8U3 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
RTL3Q8N8U3 CENPCP1-201ENST00000533085 2578 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.94□□□□□ -2.1
RTL3Q8N8U3 AC092268.1-201ENST00000342691 405 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 Y_RNA.384-201ENST00000383909 102 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 MIR521-1-201ENST00000384902 87 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 RNY4P36-201ENST00000391116 96 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.94□□□□□ -2.1
RTL3Q8N8U3 AC243428.1-201ENST00000421099 264 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 HMGN2P38-201ENST00000423806 265 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.94□□□□□ -2.1
RTL3Q8N8U3 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.94□□□□□ -2.1
RTL3Q8N8U3 ELOCP24-201ENST00000456370 334 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.94□□□□□ -2.1
RTL3Q8N8U3 AC016632.1-201ENST00000503994 196 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 AC005741.1-201ENST00000511094 432 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 RNA5SP490-201ENST00000517141 136 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 AC109446.1-201ENST00000566172 220 ntBASIC1.94□□□□□ -2.1
RTL3Q8N8U3 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.94□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 150.5 ms